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BioNeMo
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    NVIDIA-BioNeMo/bionemo-framework
    • Home
    • BioNeMo Recipes
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    NVIDIA-BioNeMo/bionemo-framework
    • Home
        • Overview
        • Hardware and Software Prerequisites
        • Initialization Guide
        • Development
        • Training Models
        • Using SLURM
      • Recipes
        • Models
          • Models Directory
          • Amplify
          • Codonfm
              • Common
          • Esm2
              • Common
          • Geneformer
            • Model readme
          • Llama3
              • Common
          • Mixtral
              • Common
          • Qwen
              • Common
        • Recipes
          • Recipes Directory
          • Context Parallelism
          • Codonfm native te
            • Hydra config
          • Codonfm ptl te
              • Data curation
            • Notebooks
              • 0-Zero-Shot-Mutation-Cancer-Hotspot
              • Mutation Datasets Preprocessing
              • 000 Annotation File Processing
              • 1-Zero-Shot-Mutation-Variant-DDD-ASD
              • 2-Zero-Shot-Mutation-Variant-Clinvar-Alphamissense
              • 3-Zero-Shot-Mutation-Variant-Clinvar-Synonymous
              • Tutorial 4: RiboNN Translation Efficiency Prediction with Encodon
              • Tutorial 5: mRFP Expression Prediction with Encodon
              • Tutorial 6: mRNA Stability Prediction with Encodon
          • Eden megatron
                  • Data
                    • Checkpoint
              • Nucleotide fast tokenizer 256
              • Nucleotide fast tokenizer 512
          • Esm2 accelerate te
            • Example 8m checkpoint
            • Hydra config
          • Esm2 native te
            • Hydra config
          • Esm2 peft te
            • Example 8m checkpoint
            • Hydra config
          • Evo2 megatron
            • Examples
              • Evaluating Evo2 with GFMBench-API (BioNeMo Recipe)
              • Fine tuning tutorial
              • Lora fine tuning tutorial
              • Zero-shot prediction of BRCA1 variant effects with Evo 2
              • Configs
                  • Data
                    • Checkpoint
              • Nucleotide fast tokenizer 256
              • Nucleotide fast tokenizer 512
          • Fp8 analysis
          • Geneformer native te mfsdp fp8
            • Hydra config
              • Model
          • Llama3 native te
            • Hydra config
              • Nucleotide fast tokenizer
          • Opengenome2 llama native te
            • OpenGenome2 Metagenome Dataset: Sharding, Shuffling, and Tokenization in the LlaMA 3 Recipe
            • Hydra config
              • Nucleotide fast tokenizer
          • Vit
            • Config
            • Esm2
      • Tutorials
      • Data Sets
        • CELLxGENE
        • UniProt Dataset
        • Code Review
        • Contributing
        • Writing Documentation
          • Jupyter Notebook Support
          • MkDocs
      • Frequently Asked Questions
    • Models
      • Amplify
      • Evo2
      • Geneformer
      • ESM 2
        • Pre-trained Checkpoints

    SUMMARY

    • Hardware and Software Prerequisites
    • Initialization Guide
    • Development
    • Training Models
    • Using SLURM
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