> For clean Markdown of any page, append .md to the page URL.
> For a complete documentation index, see https://docs.nvidia.com/clara/parabricks/llms.txt.
> For AI client integration (Claude Code, Cursor, etc.), connect to the MCP server at https://docs.nvidia.com/clara/parabricks/_mcp/server.

# 4.1.1-1 Release Notes

## Bug Fixes

* Fixed a critical bug that makes germline pipeline run two times.
* Fixed --no-markdup option in rna\_fq2bam
* Fixed a bug in rna\_fq2bam when some values in bam are not aligned properly

For further information refer to the [Parabricks datasheet](https://resources.nvidia.com/en-us-hc-genomics/healthcare-genomics#page=1).