> For clean Markdown of any page, append .md to the page URL.
> For a complete documentation index, see https://docs.nvidia.com/clara/parabricks/v4.7.1/tutorials/llms.txt.
> For AI client integration (Claude Code, Cursor, etc.), connect to the MCP server at https://docs.nvidia.com/clara/parabricks/_mcp/server.

# Tutorials

This section contains:

* A simple, reproducible [example](/tutorials/step-by-step-tutorials#step-by-step-tutorials) of using Parabricks from the command line,
* Two more involved examples showing the use of a larger number of options,
* Detailed instructions on using Parabricks on a variety of cloud platforms and
* Instructions for retraining the Parabricks [DeepVariant](/tutorials/deep-variant-training-using-parabricks) model on custom genomic data.

## Docs

- [Step-by-Step Tutorials](https://docs.nvidia.com/clara/parabricks/v4.7.1/tutorials/step-by-step-tutorials.md): 
- [Getting the Sample Data](https://docs.nvidia.com/clara/parabricks/v4.7.1/tutorials/step-by-step-tutorials/getting-the-sample-data.md): 
- [FQ2BAM Tutorial](https://docs.nvidia.com/clara/parabricks/v4.7.1/tutorials/step-by-step-tutorials/fq-2-bam-tutorial.md): 
- [HaplotypeCaller Tutorial](https://docs.nvidia.com/clara/parabricks/v4.7.1/tutorials/step-by-step-tutorials/haplotype-caller-tutorial.md): 
- [Detailed Tutorials for Parabricks Pipelines](https://docs.nvidia.com/clara/parabricks/v4.7.1/tutorials/detailed-tutorials.md): 
- [Whole-Genome Small Variant Calling](https://docs.nvidia.com/clara/parabricks/v4.7.1/tutorials/detailed-tutorials/wgs-variant-calling.md): 
- [Whole-Genome Somatic Small Variant Calling](https://docs.nvidia.com/clara/parabricks/v4.7.1/tutorials/detailed-tutorials/wgs-somatic-small-variant-calling.md): 
- [Cloud Usage Guides](https://docs.nvidia.com/clara/parabricks/v4.7.1/tutorials/cloud-usage-guides.md): 
- [Benchmarking Alignment and Variant Calling for Whole Genome Data from Complete Genomics using NVIDIA Parabricks on AWS](https://docs.nvidia.com/clara/parabricks/v4.7.1/tutorials/cloud-usage-guides/complete-genomics-on-aws.md): 
- [Running NVIDIA Parabricks on AWS](https://docs.nvidia.com/clara/parabricks/v4.7.1/tutorials/cloud-usage-guides/aws.md): 
- [Running NVIDIA Parabricks on Azure](https://docs.nvidia.com/clara/parabricks/v4.7.1/tutorials/cloud-usage-guides/azure.md): 
- [Running NVIDIA Parabricks on DNAnexus](https://docs.nvidia.com/clara/parabricks/v4.7.1/tutorials/cloud-usage-guides/dna-nexus.md): 
- [Running NVIDIA Parabricks on GCP](https://docs.nvidia.com/clara/parabricks/v4.7.1/tutorials/cloud-usage-guides/gcp.md): 
- [Running NVIDIA Parabricks on nf-core](https://docs.nvidia.com/clara/parabricks/v4.7.1/tutorials/cloud-usage-guides/nf-core.md): 
- [Running NVIDIA Parabricks on OCI](https://docs.nvidia.com/clara/parabricks/v4.7.1/tutorials/cloud-usage-guides/oci.md): 
- [Running NVIDIA Parabricks on Terra](https://docs.nvidia.com/clara/parabricks/v4.7.1/tutorials/cloud-usage-guides/terra.md): 
- [DeepVariant Training Using Parabricks](https://docs.nvidia.com/clara/parabricks/v4.7.1/tutorials/deep-variant-training-using-parabricks.md):