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# Pretrain Megatron Core Datasets with NeMo AutoModel

## Introduction

Pretraining builds a base large language model (LLM) by training a randomly initialized model to predict the next token across massive, unlabeled datasets.

Robust pretraining establishes a foundation of linguistic competence and world knowledge that scales with data, parameters, and compute. This base model then serves as the necessary starting point for later fine-tuning or domain-specific adaptation.

NeMo AutoModel provides an end-to-end recipe to run LLM pretraining with Hugging Face–native models and Megatron Core-style datasets.

## Model and Dataset Context

This guide explains how to pretrain OpenAI’s `GPT2-124M` model on a FineWeb-Edu subset of 10 billion tokens.

### About the FineWeb-Edu Dataset

[FineWeb-Edu](https://huggingface.co/datasets/HuggingFaceFW/fineweb-edu) is a dataset consisting of 1.3T tokens of educational web pages filtered from the larger [FineWeb](https://huggingface.co/datasets/HuggingFaceFW/fineweb) dataset. The educational web pages were filtered from the main dataset using a fine-tuned [BERT](https://huggingface.co/docs/transformers/en/model_doc/bert)-like classifier. You can find more information about the filtering process in the [FineWeb-Edu blog post](https://huggingface.co/spaces/HuggingFaceFW/blogpost-fineweb-v1).

The following example shows the data format:

```json
{
    "id": "<urn:uuid:673b1bf6-2c30-40ae-992b-c387d00a836a>",
    "dump": "CC-MAIN-2013-20",
    "text": "No. 24; Updated March 2011
    Click here to download and print a PDF version of this document.
    Parents are usually the first to recognize that their child has a problem with emotions or behavior. Still, the decision to seek professional help can be difficult and painful for a parent. The first step is to gently try to talk to the child. An honest open talk about feelings can often help. Parents may choose to consult with the child's physicians, teachers, members of the clergy, or other adults who know the child well. These steps may resolve the problems for the child and family.
    Following are a few signs which may indicate that a child and adolescent psychiatric evaluation will be useful ...",
    "url": "https://www.aacap.org/AACAP/Families_and_Youth/Facts_for_Families/FFF-Guide/When-to-Seek-Help-for-Your-Child-024.aspx",
    "date": null,
    "file_path": "s3://commoncrawl/crawl-data/CC-MAIN-2013-20/segments/1368696381249/warc/CC-MAIN-20130516092621-00000-ip-10-60-113-184.ec2.internal.warc.gz",
    "language": "en",
    "language_score": 0.927742,
    "token_count": 755,
    "score": 3.375,
    "int_score": 3,
}
```

#### Download the FineWeb-Edu Dataset

This guide uses the FineWeb-Edu 10BT sample, which is a collection of approximately 10 billion tokens randomly drawn from the full FineWeb-Edu dataset. To prepare the data, run the following commands:

```bash
# run this inside the AutoModel directory

git clone https://github.com/facebookresearch/lingua.git
uv venv lingua/.venv
source lingua/.venv/bin/activate
uv pip install -r lingua/requirements.txt
MEMORY_GB=16
DATA_DIR=./fineweb_edu
python lingua/setup/download_prepare_hf_data.py fineweb_edu_10bt "$MEMORY_GB" --data_dir "$DATA_DIR" --seed 42 --nchunks 1
```

Set `MEMORY_GB` to the amount of system memory allocated to `terashuf` (the tool used for sample shuffling), and set `DATA_DIR` to the root directory where the data will be stored. For example:

```bash
python lingua/setup/download_prepare_hf_data.py fineweb_edu_10bt 16 --data_dir ./fineweb_edu --seed 42 --nchunks 1
```

The expected directory structure is as follows:

```bash
$ tree fineweb_edu/
fineweb_edu/
├── fineweb_edu_10bt
│   ├── datatrove
│   │   ├── completions
│   │   │   ├── 00000
│   │   │   ├── 00001
│   │   │   ├── 00002
│   │   │   ├── 00003
│   │   │   ├── 00004
│   │   │   ├── 00005
│   │   │   │   ...
│   │   │   └── 00063
│   │   ├── executor.json
│   │   ├── logs
│   │   │   ├── task_00000.log
│   │   │   ├── task_00001.log
│   │   │   ├── task_00002.log
│   │   │   ├── task_00003.log
│   │   │   ├── task_00004.log
│   │   │   ├── task_00005.log
│   │   │   │   ...
│   │   │   └── task_00063.log
│   │   ├── stats
│   │   │   ├── 00000.json
│   │   │   ├── 00001.json
│   │   │   ├── 00002.json
│   │   │   ├── 00003.json
│   │   │   ├── 00004.json
│   │   │   ├── 00005.json
│   │   │   │   ...
│   │   │   └── 00063.json
│   │   └── stats.json
│   ├── fineweb_edu_10bt.chunk.00000.jsonl
│   │   ...
│   ├── fineweb_edu_10bt.chunk.00013.jsonl
│   ├── sample
│   │   └── 10BT
│   │       ├── 000_00000.parquet
│   │       │   ...
│   │       └── 013_00000.parquet
│   └── terashuf
│       ├── LICENSE
│       ├── Makefile
│       ├── README.md
│       ├── terashuf
│       └── terashuf.cc
└── fineweb_edu_10bt_shuffled
    ├── fineweb_edu_10bt.chunk.00.jsonl
    └── fineweb_edu_10bt.val.jsonl
```

## Preprocess to a Megatron Core Dataset

NeMo AutoModel provides a tool that tokenizes data and saves it in the Megatron Core dataset format. Use the tool as follows:

```bash
uv run tools/preprocess_megatron_dataset.py --input "fineweb_edu/fineweb_edu_10bt/fineweb_edu_10bt.chunk.*.jsonl" --json-keys text --output-prefix processed_data --output-path fineweb_edu/megatron_gpt2/ --workers 8 --pretrained-model-name-or-path openai-community/gpt2 --append-eod
```

The directory should look like this:

```bash
$ tree fineweb_edu/megatron_gpt2/
fineweb_edu/megatron_gpt2/
├── processed_data_0_text_document.bin
├── processed_data_0_text_document.idx
├── processed_data_10_text_document.bin
├── processed_data_10_text_document.idx
├── processed_data_11_text_document.bin
├── processed_data_11_text_document.idx
├── processed_data_12_text_document.bin
├── processed_data_12_text_document.idx
├── processed_data_13_text_document.bin
├── processed_data_13_text_document.idx
├── processed_data_1_text_document.bin
├── processed_data_1_text_document.idx
├── processed_data_2_text_document.bin
├── processed_data_2_text_document.idx
├── processed_data_3_text_document.bin
├── processed_data_3_text_document.idx
├── processed_data_4_text_document.bin
├── processed_data_4_text_document.idx
├── processed_data_5_text_document.bin
├── processed_data_5_text_document.idx
├── processed_data_6_text_document.bin
├── processed_data_6_text_document.idx
├── processed_data_7_text_document.bin
├── processed_data_7_text_document.idx
├── processed_data_8_text_document.bin
├── processed_data_8_text_document.idx
├── processed_data_9_text_document.bin
└── processed_data_9_text_document.idx

1 directory, 28 files
```

> **Tip**
>
> Set `--workers` to the number of CPU cores to use for parallel tokenization.

## Use a Recipe for Pretraining

This example demonstrates how to pretrain an LLM by using the NeMo AutoModel library. It uses the LLM [training recipe](https://github.com/NVIDIA-NeMo/Automodel/blob/r0.7.0/nemo_automodel/recipes/llm/train_ft.py), specifically `TrainFinetuneRecipeForNextTokenPrediction`. This recipe orchestrates loading, dataset preparation, optimizer setup, distributed training, checkpointing, and logging.

### What is a Recipe?

A recipe in NeMo AutoModel is a self-contained orchestration module that wires together all
components needed to perform a specific task, such as pretraining.
It is equivalent to a `Trainer` class but is highly modular, stateful, and reproducible.

The `TrainFinetuneRecipeForNextTokenPrediction` class is one such recipe. It inherits from `BaseRecipe` and implements:

* `setup()`: Builds all training components from the config.

* `run_train_validation_loop()`: Executes training and validation steps.

* Additional responsibilities: Checkpoint handling, logging, and RNG setup.

### Recipe Config Example

The following is a complete configuration based on `examples/llm_pretrain/megatron_pretrain_gpt2.yaml`:

```yaml
# Copyright (c) 2025, NVIDIA CORPORATION.  All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

# To run this recipe, please use the following command:
# uv run automodel examples/llm_pretrain/megatron_pretrain_gpt2.yaml --nproc-per-node 8
# Adjust --nproc-per-node to the number of GPUs available on your host machine.

recipe: TrainFinetuneRecipeForNextTokenPrediction

# The model section is responsible for configuring the model we want to finetune.
# Since we want to use the GPT2-124M model, we pass `openai-community/gpt2` to the
# `pretrained_model_name_or_path` option.
model:
  _target_: nemo_automodel.NeMoAutoModelForCausalLM.from_config
  config:
    _target_: transformers.AutoConfig.from_pretrained
    pretrained_model_name_or_path: openai-community/gpt2

# As mentioned earlier, we are using the FineWeb-Edu dataset. NeMo AutoModel provides the MegatronPretraining
# class which prepares the dataset by loading, packing, and shuffling. We use the "train" split for
# training.
dataset:
  _target_: nemo_automodel.components.datasets.llm.megatron_dataset.MegatronPretraining
  paths: fineweb_edu/megatron_gpt2/processed_data_*_text_document*  # REPLACE THIS
  index_mapping_dir: fineweb_edu/megatron_gpt2/mapping_dir  # REPLACE THIS
  tokenizer:
    _target_: nemo_automodel._transformers.auto_tokenizer.NeMoAutoTokenizer.from_pretrained
    pretrained_model_name_or_path: openai-community/gpt2
  seq_length: 1024
  split: "0.99, 0.01, 0.00"  # train, validation, test
  splits_to_build: "train"  # has to be one of train, validation, test

dataloader:
  _target_: torchdata.stateful_dataloader.StatefulDataLoader
  collate_fn: torch.utils.data.default_collate
  dataloader_type: "single"  # or "cyclic"

# Similarly, for validation we use the "validation" split
validation_dataset:
  _target_: nemo_automodel.components.datasets.llm.megatron_dataset.MegatronPretraining
  paths: fineweb_edu/megatron_gpt2/processed_data_*_text_document*  # REPLACE THIS
  index_mapping_dir: fineweb_edu/megatron_gpt2/mapping_dir  # REPLACE THIS
  tokenizer:
    _target_: nemo_automodel._transformers.auto_tokenizer.NeMoAutoTokenizer.from_pretrained
    pretrained_model_name_or_path: openai-community/gpt2
  seq_length: 1024
  split: "0.99, 0.01, 0.00"  # train, validation, test
  splits_to_build: "validation"  # has to be one of train, validation, test
  num_val_samples: 1024

step_scheduler:
  global_batch_size: 512
  local_batch_size: 32
  ckpt_every_steps: 1000 # checkpoints state every 1000 steps
  val_every_steps: 250  # validates every 250 steps
  num_epochs: 1
  max_steps: 18500

dist_env:
  backend: nccl
  timeout_minutes: 1

seed: 1111

checkpoint:
  enabled: true
  checkpoint_dir: checkpoints/
  model_save_format: torch_save # torch_save or safetensors
  save_consolidated: false # Sharded torch-save checkpoints; use the DCP-to-HF export script when HF weights are needed.

# For distributed processing, we use FSDP2.
distributed:
  strategy: fsdp2
  dp_size: null
  dp_replicate_size: null  # dp_shard_size = dp_size / dp_replicate_size when set. For DDP use strategy: ddp.
  tp_size: 1
  cp_size: 1
  sequence_parallel: false

loss_fn:
  _target_: nemo_automodel.components.loss.masked_ce.MaskedCrossEntropy

validation_dataloader:
  _target_: torchdata.stateful_dataloader.StatefulDataLoader
  collate_fn: torch.utils.data.default_collate
  dataloader_type: "single"

# We will use the standard AdamW optimizer, but you can specify any optimizer you want, by changing
# the import path using the _target_ option.
optimizer:
  _target_: torch.optim.AdamW
  betas: [0.9, 0.95]
  lr: 0.0006
  weight_decay: 0.1

# We will use a cosine LR schedule with 700 warm-up steps.
# This means the LR will linearly increase to a maximum of 6e-4, after which
# it will decay to 0 over the course of training.
lr_scheduler:
  lr_decay_style: cosine
  lr_warmup_steps: 700
  min_lr: 0.0

# Uncomment and configure for W&B logging
# wandb:
#   project: <your_wandb_project>
#   entity: <your_wandb_entity>
#   name: <your_wandb_exp_name>
#   dir: <your_wandb_save_dir>

```

> **Tip**
>
> To add weights to the dataset blends, pass a list. For example, `paths: ["30", "fineweb_edu/megatron_gpt2/processed_data_0_text_document", "70", "fineweb_edu/megatron_gpt2/processed_data_1_text_document"]`.

### Balance Sampling and Domain Objectives

Sampling weights control how often a domain appears in a batch. They do not
need to be the same as the domain's desired contribution to the optimization
objective. Configure both values with `domain_mixture`:

See the complete runnable
[`megatron_pretrain_gpt2_domain_mixture.yaml`](https://github.com/NVIDIA-NeMo/Automodel/blob/r0.7.0/examples/llm_pretrain/megatron_pretrain_gpt2_domain_mixture.yaml)
example for the full model, dataset, validation, optimizer, and scheduler setup.

```yaml
dataset:
  _target_: nemo_automodel.components.datasets.llm.megatron_dataset.MegatronPretraining
  paths:
    - "70"
    - /data/web/processed_text_document
    - "30"
    - /data/code/processed_text_document
  # Keep the tokenizer, sequence length, split, and index mapping settings
  # from the complete recipe above.

domain_mixture:
  domains:
    # Order must match the weighted paths above.
    - name: web
      path: /data/web/processed_text_document
      sampling_weight: 0.70
      objective_weight: 0.50
    - name: code
      path: /data/code/processed_text_document
      sampling_weight: 0.30
      objective_weight: 0.50

# Add one validation dataset per domain. The suffix becomes the domain name.
validation_dataset_web:
  _target_: nemo_automodel.components.datasets.llm.megatron_dataset.MegatronPretraining
  paths: /data/web/processed_text_document
  # Use the validation settings from the complete recipe above.

validation_dataset_code:
  _target_: nemo_automodel.components.datasets.llm.megatron_dataset.MegatronPretraining
  paths: /data/code/processed_text_document
  # Use the validation settings from the complete recipe above.

checkpoint:
  best_metric_key: weighted
```

For a domain with normalized sampling weight (q_i) and objective weight
(w_i), the recipe multiplies each supervised token loss by (w_i / q_i).
This keeps one optimizer and learning-rate schedule while making the expected
training loss equal to the requested weighted domain objective. The recipe
logs achieved supervised-token fractions for each domain, reports every
per-domain validation loss, and reports their objective-weighted aggregate as
`weighted`.

The normalized `sampling_weight` values must match the explicit weights in
the `MegatronPretraining` dataset's `dataset.paths`. Each domain must also declare
its corpus prefix with `path`. Setup compares these prefixes against the training
blend in order, including when sampling weights are equal. For split-specific
paths, the comparison uses `dataset.paths.train`. Prefixes are compared as strings
after trimming surrounding whitespace; paths are not resolved on the filesystem.
Domain names are labels for metrics and named validation datasets and are never
inferred from path text. Configure each `validation_dataset_<name>` with that
domain's validation corpus, which may use a different prefix from training.

> **Note**
>
> Existing `domain_mixture` recipe configs must add `path` to every domain entry,
> using the corresponding training corpus prefix as shown above. Missing or
> misordered paths now raise a `ValueError` during setup instead of allowing an
> unchecked positional binding.

JSON blend files and implicit unweighted blends are not supported.
Sequence packing is not supported with `domain_mixture` because
packed batches do not currently preserve per-token domain IDs. Pipeline
parallelism is also not currently supported because its target contract does
not carry per-token objective weights. Context parallelism is disabled until
its distributed gradient contract is covered by parity tests. The configured
loss must use `reduction: sum`. The built-in masked, fused-linear, and chunked
cross-entropy losses accept these objective weights.

`TEParallelCrossEntropy` is **not** supported: its Triton backward reads the
upstream gradient as a single scalar, so per-token weights would apply the
first sample's multiplier to the whole microbatch — the reported loss would
look correct while the gradients were wrong. The recipe rejects that loss at
setup rather than weighting it incorrectly.

Only the cross-entropy term is domain-weighted. A MoE auxiliary/router loss is
scaled independently of loss magnitude, so its strength relative to the
weighted CE varies with each microbatch's domain composition; an
`aux_loss_coeff` tuned without `domain_mixture` may need revisiting.

The logged `domain_mixture/<name>_label_tokens` counts exclude labels equal to
`-100`. Datasets that mark padding through a separate `loss_mask`
rather than by writing `ignore_index` into `labels` (Megatron's GPT dataset
does this) therefore report one supervised token per position, so the logged
fraction equals the raw sample fraction.

## Load Large Models

In distributed training, the typical model-loading pipeline has each GPU load the entire model and then retain only the shard it needs. This approach becomes problematic when the model size exceeds the memory capacity of a single GPU. For example, a 70B-parameter model requires about 140 GB of memory for its parameters when using the BF16 data type (2 bytes per parameter). Because most widely used GPUs are limited to 80 GB, the full model cannot be loaded directly onto a single device.

In these scenarios, you can pass `is_meta_device: true` in the model config. The model is then instantiated using [PyTorch's Meta device](https://docs.pytorch.org/docs/stable/meta.html), which loads no data but stores the parameter metadata necessary for sharding the model. After the model is sharded, only the weights required by each model shard are loaded.

## Run the Pretraining Recipe

If you saved or plan to use the provided configuration at `examples/llm_pretrain/megatron_pretrain_gpt2.yaml`, run the following command:

```bash
uv run automodel examples/llm_pretrain/megatron_pretrain_gpt2.yaml --nproc-per-node 2
```

### Sample Output

During training, stepwise logs report loss, memory usage, and tokens per second. The recipe saves checkpoints under the configured `checkpoints/` directory.

For each training batch, the pretraining recipe logs the current loss, along with current peak memory usage and tokens per second (TPS).

As training progresses, you should observe the model loss beginning to converge. To verify your results, compare your convergence curves with the baseline benchmarks in the [llm.c repository](https://github.com/karpathy/llm.c/discussions/481).

![Example of GPT-2 training convergence on FineWeb-Edu-10B](/nemo/automodel/_fern-img/97188d36c55b42493eadb8ad387852b1a4361fac55d5be154e07d654fc5c6801.webp)