NVIDIA NIM for AlphaFold2

AlphaFold2

• Overview
  • Advantages of NIMs
• Prerequisites
  • Supported Hardware
  • NGC (NVIDIA GPU Cloud) Account
  • NGC CLI Tool
• Quickstart Guide
• Deployment Guide
  • View available NIM container information
  • Pull the container image
    • NIMTools
    • Docker
    • NGC SDK
  • Run the Container
    • Optional runtime variables and performance tuning
    • Checking the status of the AlphaFold2 NIM
    • Killing a running container
    • Model Checkpoint Caching
• AlphaFold2 NIM Endpoints
  • Usage
    • Predict structure from an input sequence
    • Predict MSA from an input sequence
    • Predict structure from an input MSA
• AlphaFold2 NIM Performance
  • Recommended System Requirements
  • General Performance Guidelines
  • Sequence to MSA
  • MSA to Structure and Sequence to Structure
• Configuring the NIM at Runtime
  • Brief review: starting the AlphaFold2 NIM
  • Configuring the location of the NIM cache
  • Using an alternative port for NIM requests
  • Configuring the number of parallel MSA runners and the number of threads available to each runner