Support Matrix

Sequence Databases and Search Types

The MSA NIM supports a variety of MMSeqs2-compatible databases (both those prepared by the user and pre-made indexes available as NGC Models). The following databases are currently available on NGC:

Supported Hardware

Minimum System Hardware Requirements

Supported NVIDIA GPUs

The MSA Search NIM supports NVIDIA GPUs with at least 48 GB of GPU Memory. It has been tested on the following recommended configurations:

Testing Locally Available Hardware

• Begin with Docker-supported operating system
• Install Docker - minimum version: 23.0.1
• Install NVIDIA Drivers - minimum version: 535
• Install the NVIDIA Container Toolkit - minimum version: 1.13.5
• Verify your container runtime supports NVIDIA GPUs by running

docker run --rm --runtime=nvidia --gpus all ubuntu nvidia-smi

Example output:

+-----------------------------------------------------------------------------+
| NVIDIA-SMI 525.78.01    Driver Version: 525.78.01    CUDA Version: 12.0     |
|-------------------------------+----------------------+----------------------+
| GPU  Name        Persistence-M| Bus-Id        Disp.A | Volatile Uncorr. ECC |
| Fan  Temp  Perf  Pwr:Usage/Cap|         Memory-Usage | GPU-Util  Compute M. |
|                               |                      |               MIG M. |
|===============================+======================+======================|
|   0  NVIDIA GeForce ...  Off  | 00000000:01:00.0 Off |                  N/A |
| 41%   30C    P8     1W / 260W |   2244MiB / 11264MiB |      0%      Default |
|                               |                      |                  N/A |
+-------------------------------+----------------------+----------------------+
+-----------------------------------------------------------------------------+
| Processes:                                                                  |
|  GPU   GI   CI        PID   Type   Process name                  GPU Memory |
|        ID   ID                                                   Usage      |
|=============================================================================|
+-----------------------------------------------------------------------------+