NVIDIA NIM for OpenFold2

OpenFold2

• Overview
  • Advantages of NIMs
• Release Notes
  • Release 2.0.0
    • Summary
    • Key Changes
  • Release 1.2.0
    • Summary
    • Key Features
  • Release 1.1.0
    • Summary
    • Key Features
  • Release 1.0.0
    • Summary
• Prerequisites
  • NGC (NVIDIA GPU Cloud) Account
  • NGC CLI Tool
• Supported Hardware
  • GPU
  • Storage
  • CPU and System Memory
• Getting Started
  • Pull and Run the NIM
  • Submit Health-Check Requests to the NIM as it starts up
  • Run Inference
• Example Requests
  • Using the OpenFold2 NIM
    • Predict Structure
• Template Processing
  • Overview
  • Template Processing
    • Required Fields
    • Processing Pipeline
    • Template Feature Composition
    • Use Cases
    • Example Request Structure
  • Key Technical Features
  • Impact on Structure Prediction
    • Template Processing Advantages
    • Performance Considerations
  • Best Practices
    • When to Use Templates
    • Template Selection Guidelines
    • Sequence Identity Requirements
  • Technical Implementation Notes
• Migrate from HHR-based Templates to Explicit mmCIF Templates
  • Purposes of 2.0.0 Changes
  • Removed Features
  • Step-by-Step Migration
    • 1. Prepare Your Local mmCIF Template Structure
    • 2. Update Your JSON Request Format
    • 3. Update Python Code Examples
    • 4. Clean Cached Data (Optional)
  • Common Issues and Solutions
  • Performance Considerations
    • Expected Improvements in 2.0.0:
    • Accuracy Impact
  • Advanced Usage Patterns
    • Multiple Templates
    • Programmatic Template Management
  • Helpful Resources
  • Migration Checklist
• Performance
  • Version 2.0.0
    • Performance and Accuracy
      • Performance Comparison (Time in seconds) on H100
      • Accuracy Metrics on H100
  • Version 1.0.0
    • Recommended System Requirements
    • Performance Benchmarks
      • Version 1.0.0 Configuration
• Configuration Alternatives at Runtime
  • Start the OpenFold2 NIM
  • Using an alternative port for OpenFold2 NIM requests
  • Running in Torch Mode
• API Reference
  • OpenAPI Schema
    • Reference