Bug Fixes
The flag
--no-markdup
is correctly processed.
fq2bam, fq2bam_meth, rna_fq2bam, and minimap2:
Fixed a bug where the
--gpuwrite
option crashed with "invalid device ordinal" or "invalid configuration argument" errors in rare cases.
Fixed a crash that occurred when the BAM file contained long reads.
Fixed a crash that occurred when the BAM header was not compatible with the reference.