applybqsr
bam2fq
bammetrics
bamsort
bqsr
collectmultiplemetrics
dbsnp
deepvariant
deepvariant_germline
fq2bam (FQ2BAM + BWA-MEM)
fq2bamfast (FQ2BAM + BWA-MEM)
genotypegvcf
germline (GATK Germline Pipeline)
haplotypecaller
indexgvcf
markdup
minimap2 (Beta)
mutectcaller
pacbio_germline (Beta)
postpon
prepon
rna_fq2bam
somatic (Somatic Variant Caller)
starfusion
