Getting The Sample Data

NVIDIA Parabricks 4.2.1

Download the sample data with the following command. This data will be used in the tutorial examples.

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$ wget -O parabricks_sample.tar.gz \ "https://s3.amazonaws.com/parabricks.sample/parabricks_sample.tar.gz"

Note

The tar file is 9.3GB and, when extracted, an additional 14GB.

Extract the data with this command:

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$ tar xvf parabricks_sample.tar.gz parabricks_sample/ parabricks_sample/Data/ parabricks_sample/Data/sample_2.fq.gz parabricks_sample/Data/sample_1.fq.gz parabricks_sample/Ref/ parabricks_sample/Ref/Homo_sapiens_assembly38.fasta parabricks_sample/Ref/Homo_sapiens_assembly38.fasta.pac parabricks_sample/Ref/Homo_sapiens_assembly38.fasta.ann parabricks_sample/Ref/Homo_sapiens_assembly38.known_indels.vcf.gz.tbi parabricks_sample/Ref/Homo_sapiens_assembly38.fasta.amb parabricks_sample/Ref/Homo_sapiens_assembly38.dict parabricks_sample/Ref/Homo_sapiens_assembly38.fasta.fai parabricks_sample/Ref/Homo_sapiens_assembly38.known_indels.vcf.gz parabricks_sample/Ref/Homo_sapiens_assembly38.fasta.bwt parabricks_sample/Ref/Homo_sapiens_assembly38.fasta.sa

You are now ready to try the example commands shown in the rest of the Tutorials section.

© Copyright 2023, Nvidia. Last updated on Dec 13, 2023.