Collecting system information | BioNeMo Inference Runtime

To help you with the installation of BioNeMo Inference Runtime (BioIR), system information can be obtained with the commands below.

1. Determine the OS Distribution Installed on the Host

$ # Check OS version
$ cat /etc/os-release
$ # Example output for Ubuntu:
$ # NAME="Ubuntu"
$ # VERSION="24.04.3 LTS (Noble Numbat)"
$ # ID=ubuntu
$ # VERSION_ID="24.04"

2. Determine the CPU Architecture

$ # Set CPU arch as environment variable, on Ubuntu/Debian system
$ export CPU_ARCH=$(dpkg --print-architecture)
$ echo "CPU_ARCH: ${CPU_ARCH}"
$ # Example output:
$ # amd64
$ 
$ # Set CPU arch as environment variable, on a non-Ubuntu/Debian system
$ export CPU_ARCH=$(uname -m)
$ echo "CPU_ARCH: ${CPU_ARCH}"
$ # Example output:
$ # x86_64

3. Determine the GPU Category

From the root of your BioNeMo-Inference-Runtime clone, run the script below with possible output values:

(a) DGX
(b) HGX
(c) Tesla / datacenter
(d) GeForce

$ ./scripts/print_gpu_system_category.sh
$ # Example output
$ (a) DGX
$ system     : Dell  Inc. Dell Pro Max with Station GB300
$ gpu        : NVIDIA GB300 x1 (brand: NVIDIA)
$ nvswitches : 0
$ --------------------------

4. Determine the GPU Model

$ # Check GPU model
$ nvidia-smi --query-gpu=name --format=csv
$ # Example output:
$ # name
$ # NVIDIA GB300

If you see a message like Command 'nvidia-smi' not found, then attempt to determine GPU model with the command below:

$ # Check GPU model
$ lspci | grep -Ei "VGA|3D|Display" | grep -i NVIDIA
$ # Example output:
$ # 01:00.0 3D controller: NVIDIA Corporation GH100 [H100 SXM5 80GB] (rev a1)

5. Determine the NVIDIA Driver Version Installed on the Host

If the nvidia-smi command in Item 4 above is successful, then run the command below. Otherwise, the NVIDIA Driver is not correctly installed.

$ # Check NVIDIA Driver version
$ nvidia-smi --query-gpu=driver_version --format=csv
$ # Example output:
$ # driver_version
$ # 580.65.06

6. Determine the Docker Version Installed on the Host

$ # Check Docker version
$ docker --version
$ # Example output:
$ # Docker version 29.2.1, build a5c7197

7. Determine the NVIDIA Container Toolkit Version Installed on the Host

Refer to NVIDIA Container Toolkit for version details.

$ # Check NVIDIA Container Toolkit version
$ nvidia-ctk --version
$ # Example output:
$ # NVIDIA Container Toolkit CLI version 1.19.0
$ # commit: ec7b4e2fa2caecad6d89be4a26029b831fe7503a