Tool Reference

NVIDIA Parabricks v4.2.0

Tools By Category

Category	Tool
FASTQ/BAM Processing	applybqsr bam2fq bamsort bqsr fq2bam (FQ2BAM + BWA-MEM) markdup
Variant Calling	deepvariant germline (GATK Germline Pipeline) haplotypecaller mutectcaller postpon prepon somatic (Somatic Variant Caller)
RNA	rna_fq2bam starfusion
Quality Control	bammetrics collectmultiplemetrics
Variant Processing	dbsnp
GVCF Processing	genotypegvcf indexgvcf