Bug Fixes

mutectcaller and haplotypecaller: Fixed a random segfault in bamOut mode.

haplotypecaller: Fixed an "allele out of index" bug in gvcf mode.

haplotypecaller: Fixed an GPU shared memory overflow bug in gvcf mode.

haplotypecaller, mutectcaller and deepvariant: Fixed a wrong return value 0 when the run fails.

minimap2: Corrected banner name when running minimap2.

minimap2: Fixed overflow issue in postsort.

minimap2: Removed max read size requirement that made some inputs unable to run.

fq2bamfast: Fix for edge case (related to multiple hits) with -C option in BWA MEM to copy auxiliary tags from FASTQ comments.