For AI agents: a documentation index is available at the root level at /llms.txt. Append /llms.txt to any URL for a page-level index, or .md for the markdown version of any page.
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  • About Parabricks
    • Software Overview
    • Release Notes
    • Publications
    • Comparison with Baseline Tools
    • Third Party Software Notices
      • ABSEIL
      • BCFTOOLS
      • BOOST
      • BWA-METH
      • BWA
      • BZIP2
      • DEEPVARIANT
      • GATK
      • VG GIRAFFE
      • HTSCODECS
      • HTSLIB
      • ISAL
      • JEMALLOC
      • LIBLZMA
      • LZ4
      • MATPLOTLIB
      • MINIMAP2
      • NUCLEUS
      • SAMTOOLS
      • STAR-FUSION
      • STAR
      • TCMALLOC
      • TENSORFLOW
      • TOOLSHED
      • ZLIB
    • End User License Agreements
  • Get Started
    • Installation Requirements
    • Deploy NVIDIA Parabricks
    • Getting the Best Performance
    • NVIDIA Grace CPU Platforms
    • Uninstalling the Software
  • Tutorials
    • Step-by-Step Tutorials
    • Detailed Tutorials
    • Cloud Usage Guides
    • DeepVariant Training Using Parabricks
  • Tool Reference
  • How to Get Help
    • Frequently Asked Questions
    • User Forum
  • About Parabricks
  • Software Overview
  • Software Tools
  • NVIDIA Parabricks WDL/Nextflow Workflows
  • Output Accuracy and Compatible CPU Software Versions
  • Release Notes
  • 4.7.1-1 Release Notes
  • 4.7.0-1 Release Notes
  • 4.6.0-1 Release Notes
  • 4.5.1-1 Release Notes
  • 4.5.0-1 Release Notes
  • 4.4.0-1 Release Notes
  • 4.3.2-1 Release Notes
  • 4.3.1-1 Release Notes
  • 4.3.0-1 Release Notes
  • 4.2.1-1 Release Notes
  • 4.2.0-1 Release Notes
  • 4.1.1-1 Release Notes
  • 4.1.0-1 Release Notes
  • 4.0.0-1 Release Notes
  • Publications
  • Comparison with Baseline Tools
  • Third Party Software Notices
  • ABSEIL
  • BCFTOOLS
  • BOOST
  • BWA-METH
  • BWA
  • BZIP2
  • DEEPVARIANT
  • GATK
  • VG GIRAFFE
  • HTSCODECS
  • HTSLIB
  • ISAL
  • JEMALLOC
  • LIBLZMA
  • LZ4
  • MATPLOTLIB
  • MINIMAP2
  • NUCLEUS
  • SAMTOOLS
  • STAR-FUSION
  • STAR
  • TCMALLOC
  • TENSORFLOW
  • TOOLSHED
  • ZLIB
  • End User License Agreements
  • Get Started
  • Installation Requirements
  • Deploy NVIDIA Parabricks
  • Getting the Best Performance
  • NVIDIA Grace CPU Platforms
  • Uninstalling the Software
  • Tutorials
  • Step-by-Step Tutorials
  • Getting the Sample Data
  • FQ2BAM Tutorial
  • HaplotypeCaller Tutorial
  • Detailed Tutorials
  • WGS Variant Calling
  • WGS Somatic Small Variant Calling
  • Cloud Usage Guides
  • Complete Genomics on AWS
  • AWS
  • Azure
  • DNANexus
  • GCP
  • nf-core
  • OCI
  • Terra
  • DeepVariant Training Using Parabricks
  • Tool Reference
  • applybqsr
  • bam2fq
  • bammetrics
  • bamsort
  • bqsr
  • collectmultiplemetrics
  • dbsnp
  • deepsomatic
  • deepvariant
  • deepvariant_germline
  • fq2bam (BWA-MEM + GATK)
  • fq2bam_meth
  • genotypegvcf
  • germline (GATK Germline Pipeline)
  • giraffe (vg giraffe + GATK)
  • haplotypecaller
  • indexgvcf
  • markdup
  • minimap2
  • mutectcaller
  • ont_germline
  • pacbio_germline
  • pangenome_aware_deepvariant
  • pangenome_germline
  • postpon
  • prepon
  • rna_fq2bam
  • somatic (Somatic Variant Caller)
  • starfusion
  • How to Get Help
  • Frequently Asked Questions
  • User Forum
About ParabricksThird Party Software Notices

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