For AI agents: a documentation index is available at the root level at /llms.txt. Append /llms.txt to any URL for a page-level index, or .md for the markdown version of any page.
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  • About Parabricks
    • Software Overview
    • Release Notes
    • Publications
    • Comparison with Baseline Tools
    • Third Party Software Notices
    • End User License Agreements
  • Get Started
    • Installation Requirements
    • Deploy NVIDIA Parabricks
    • Getting the Best Performance
    • NVIDIA Grace CPU Platforms
    • Uninstalling the Software
  • Tutorials
    • Step-by-Step Tutorials
    • Detailed Tutorials
    • Cloud Usage Guides
    • DeepVariant Training Using Parabricks
  • Tool Reference
  • How to Get Help
    • Frequently Asked Questions
    • User Forum
  • About Parabricks
  • Software Overview
  • Software Tools
  • NVIDIA Parabricks WDL/Nextflow Workflows
  • Output Accuracy and Compatible CPU Software Versions
  • Release Notes
  • 4.7.1-1 Release Notes
  • 4.7.0-1 Release Notes
  • 4.6.0-1 Release Notes
  • 4.5.1-1 Release Notes
  • 4.5.0-1 Release Notes
  • 4.4.0-1 Release Notes
  • 4.3.2-1 Release Notes
  • 4.3.1-1 Release Notes
  • 4.3.0-1 Release Notes
  • 4.2.1-1 Release Notes
  • 4.2.0-1 Release Notes
  • 4.1.1-1 Release Notes
  • 4.1.0-1 Release Notes
  • 4.0.0-1 Release Notes
  • Publications
  • Comparison with Baseline Tools
  • Third Party Software Notices
  • ABSEIL
  • BCFTOOLS
  • BOOST
  • BWA-METH
  • BWA
  • BZIP2
  • DEEPVARIANT
  • GATK
  • VG GIRAFFE
  • HTSCODECS
  • HTSLIB
  • ISAL
  • JEMALLOC
  • LIBLZMA
  • LZ4
  • MATPLOTLIB
  • MINIMAP2
  • NUCLEUS
  • SAMTOOLS
  • STAR-FUSION
  • STAR
  • TCMALLOC
  • TENSORFLOW
  • TOOLSHED
  • ZLIB
  • End User License Agreements
  • Get Started
  • Installation Requirements
  • Deploy NVIDIA Parabricks
  • Getting the Best Performance
  • NVIDIA Grace CPU Platforms
  • Uninstalling the Software
  • Tutorials
  • Step-by-Step Tutorials
  • Getting the Sample Data
  • FQ2BAM Tutorial
  • HaplotypeCaller Tutorial
  • Detailed Tutorials
  • WGS Variant Calling
  • WGS Somatic Small Variant Calling
  • Cloud Usage Guides
  • Complete Genomics on AWS
  • AWS
  • Azure
  • DNANexus
  • GCP
  • nf-core
  • OCI
  • Terra
  • DeepVariant Training Using Parabricks
  • Tool Reference
  • applybqsr
  • bam2fq
  • bammetrics
  • bamsort
  • bqsr
  • collectmultiplemetrics
  • dbsnp
  • deepsomatic
  • deepvariant
  • deepvariant_germline
  • fq2bam (BWA-MEM + GATK)
  • fq2bam_meth
  • genotypegvcf
  • germline (GATK Germline Pipeline)
  • giraffe (vg giraffe + GATK)
  • haplotypecaller
  • indexgvcf
  • markdup
  • minimap2
  • mutectcaller
  • ont_germline
  • pacbio_germline
  • pangenome_aware_deepvariant
  • pangenome_germline
  • postpon
  • prepon
  • rna_fq2bam
  • somatic (Somatic Variant Caller)
  • starfusion
  • How to Get Help
  • Frequently Asked Questions
  • User Forum
How to Get Help

User Forum

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We’re here to help! Reach out to us on our Developer Forums if you are having trouble using the software.

User guides and Reference manuals can be found on the NVIDIA Parabricks documentation page.

Answers to many frequently asked questions can be found here or on the developer forum.

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Frequently Asked Questions

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