clara/parabricks/latest/Documentation/AlphabeticalListOfAllTools.html

Tools Alphabetically By Name

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• applybqsr

• bam2fq

• bammetrics

• bamsort

• bqsr

• collectmultiplemetrics

• dbsnp

• deepvariant

• deepvariant_germline

• fq2bam (FQ2BAM + BWA-MEM)

• genotypegvcf

• germline (GATK Germline Pipeline)

• haplotypecaller

• indexgvcf

• mutectcaller

• postpon

• prepon

• rna_fq2bam

• somatic (Somatic Variant Caller)

• starfusion