clara/parabricks/3.7.0/Documentation/ToolDocs/PipelineToolsOverview.html

3.7.0

Tool

Details

deepvariant_germline

Run the germline pipeline from FASTQ to VCF using a deep neural network analysis

denovomutation

(BETA) Run the de novo mutation pipeline with 3 samples for de novo variant detection

germline

Run the germline pipeline from FASTQ to VCF

human_par

Run the germline pipeline from FASTQ to VCF with correct ploidy values for human sex chromosome handling

rna_gatk

Run the GATK Best Practices pipeline for RNA-seq data from FASTQ to VCF

somatic

Run the somatic pipeline from FASTQ to VCF

© Copyright 2022, Nvidia. Last updated on Jun 28, 2023.