Publications

Academic References to Clara Parabricks

• Franke KR, Crowgey EL.

  Accelerating next generation sequencing data analysis: An evaluation of optimized best practices for Genome Analysis Toolkit algorithms.

  Genomics Inform. 2020;
• Osamu Ogasawara, Yuichi Kodama, Jun Mashima, Takehide Kosuge, Takatomo Fujisawa,

  DDBJ Database updates and computational infrastructure enhancement, Nucleic Acids Research,

  Volume 48, Issue D1, 08 January 2020, Pages D45–D50;
• Tanjo, T., Kawai, Y., Tokunaga, K. et al.

  Practical guide for managing large-scale human genome data in research. J Hum Genet (2020).
• Shinozaki-Ushiku, A., Ishikawa, S., Komura, D. et al.

  The first case of gastric carcinoma with NTRK rearrangement: identification of a novel ATP1B–NTRK1 fusion.

  Gastric Cancer 23, 944–947 (2020).
• Ghose, Aruni et al.

  “The Emerging Role of Artificial Intelligence in the Fight Against COVID-19.”

  European urology, S0302-2838(20)30723-5. 17 Sep. 2020
• Sam Friedman, Laura Gauthier, Yossi Farjoun, Eric Banks,

  Lean and deep models for more accurate filtering of SNP and INDEL variant calls,

  Bioinformatics, Volume 36, Issue 7, 1 April 2020, Pages 2060–2067

See Also

• https://medium.com/@johnnyisraeli/accelerating-germline-and-somatic-genomic-analysis-of-whole-genomes-and-exomes-with-nvidia-clara-e3deeae2acc9

• https://medium.com/the-bioinformatics-press/gpu-accelerated-sequence-matching-bb0c8b7fe6d1