Tool Reference

NVIDIA Clara Parabricks v4.0.1

Tools By Category

Category	Tool
FASTQ/BAM Processing	applybqsr bam2fq bamsort bqsr fq2bam (FQ2BAM + BWA-MEM)
Variant Calling	deepvariant_germline deepvariant germline (GATK Germline Pipeline) haplotypecaller postpon prepon somatic (Somatic Variant Caller) mutectcaller
RNA	rna_fq2bam starfusion
Quality Control	bammetrics collectmultiplemetrics
Variant Processing	dbsnp
GVCF Processing	indexgvcf genotypegvcf