Category
Tool
FASTQ/BAM Processing
applybqsr
bam2fq
bamsort
bqsr
fq2bam (FQ2BAM + BWA-MEM)
Variant Calling
deepvariant_germline
deepvariant
germline (GATK Germline Pipeline)
haplotypecaller
postpon
prepon
somatic (Somatic Variant Caller)
mutectcaller
RNA
rna_fq2bam
starfusion
Quality Control
bammetrics
collectmultiplemetrics
Variant Processing
dbsnp
GVCF Processing
indexgvcf
genotypegvcf