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1.0

medl.tools.mmar_converter.tf_mappers package

Submodules

medl.tools.mmar_converter.tf_mappers.aiaa_mappers module

class AddLabelPointsMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class AiaaLoadMedicalImageMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class CropImageAndLabelMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

medl.tools.mmar_converter.tf_mappers.aux_ops_mappers module

class ComputeAccuracyMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ComputeBinaryPredsMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ComputeDiceMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ComputeMulticlassAccuracyMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ComputeMulticlassPredsMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class DiceMaskedOutputMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class NegLossMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ReduceMeanMaskedMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

medl.tools.mmar_converter.tf_mappers.croppad_transform_mappers module

class ClassificationFastCropByPosNegRatioMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class CropByPosNegRatioLabelOnlyMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class CropByPosNegRatioMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class CropFixedSizeRandomCenterMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class CropForegroundObjectMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class CropRandomSizeWithDisplacementMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class CropSubVolumeCenterMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class FastCropByPosNegRatioMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class FastPosNegRatioCropROIMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class PadSymmetricMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class SymmetricPadderDivMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

medl.tools.mmar_converter.tf_mappers.handler_mappers module

class AdjustLayerLRsMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class EarlyStopMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class StatsHandlerMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class TrainFlowHandlerMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

medl.tools.mmar_converter.tf_mappers.image_pipeline_mappers module

class ClassificationImagePipelineMapper: Bases: medl.tools.mmar_converter.tf_mappers.image_pipeline_mappers.SegmentationImagePipelineMapper

class ClassificationImagePipelineWithCacheMapper: Bases: medl.tools.mmar_converter.tf_mappers.image_pipeline_mappers.SegmentationImagePipelineWithCacheMapper

class ClassificationKerasImagePipelineMapper: Bases: medl.tools.mmar_converter.tf_mappers.image_pipeline_mappers.ClassificationImagePipelineMapper

class ClassificationKerasImagePipelineWithCacheMapper: Bases: medl.tools.mmar_converter.tf_mappers.image_pipeline_mappers.ClassificationKerasImagePipelineMapper, medl.tools.mmar_converter.tf_mappers.image_pipeline_mappers.ClassificationImagePipelineWithCacheMapper

class ImagePipelineMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ImagePipelineWithCacheMapper: Bases: medl.tools.mmar_converter.tf_mappers.image_pipeline_mappers.ImagePipelineMapper

class KerasImagePipelineMapper: Bases: medl.tools.mmar_converter.tf_mappers.image_pipeline_mappers.ImagePipelineMapper

class KerasImagePipelineWithCacheMapper: Bases: medl.tools.mmar_converter.tf_mappers.image_pipeline_mappers.ImagePipelineWithCacheMapper

class SegmentationImagePipelineMapper: Bases: medl.tools.mmar_converter.tf_mappers.image_pipeline_mappers.ImagePipelineMapper

class SegmentationImagePipelineWithCacheMapper: Bases: medl.tools.mmar_converter.tf_mappers.image_pipeline_mappers.SegmentationImagePipelineMapper, medl.tools.mmar_converter.tf_mappers.image_pipeline_mappers.ImagePipelineWithCacheMapper

class SegmentationKerasImagePipelineMapper: Bases: medl.tools.mmar_converter.tf_mappers.image_pipeline_mappers.SegmentationImagePipelineMapper

class SegmentationKerasImagePipelineWithCacheMapper: Bases: medl.tools.mmar_converter.tf_mappers.image_pipeline_mappers.SegmentationImagePipelineWithCacheMapper

medl.tools.mmar_converter.tf_mappers.inferer_mappers module

class TFScanClassWindowInfererMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class TFScanWindowInfererMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class TFSimpleInfererMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

medl.tools.mmar_converter.tf_mappers.intensity_transform_mappers module

class AddGaussianNoiseMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class AdjustContrastMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class CenterDataMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class MaskImageMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class NormalizeNonzeroIntensitiesMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class RandomGaussianSmoothMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class RandomMRBiasFieldMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class RandomSharpenMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ScaleByFactorMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ScaleIntensityOscillationMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ScaleIntensityRangeMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ScaleShiftIntensityMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

medl.tools.mmar_converter.tf_mappers.io_transform_mappers module

class LoadImageMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class LoadImageMasksFromNumpyMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class LoadJpgMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class LoadNiftiMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class LoadPngMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class SaveAsNiftiMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

medl.tools.mmar_converter.tf_mappers.loss_mappers module

class BinaryClassificationLossMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class CrossEntropyDiceMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class CrossEntropyMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class DiceMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class FocalDiceMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class FocalLossMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class MulticlassClassificationLossMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class WeightedMulticlassClassificationLossMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

medl.tools.mmar_converter.tf_mappers.lr_policy_mappers module

class DecayOnStepMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ReduceCosineMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ReduceOnPlateauMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ReducePolyMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

medl.tools.mmar_converter.tf_mappers.metric_mappers module

class ComputeAUCMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ComputeAverageDiceMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ComputeAverageMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

medl.tools.mmar_converter.tf_mappers.model_mappers module

class AHNetMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class DenseNet121Mapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class SegResNetMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class UNetMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

medl.tools.mmar_converter.tf_mappers.optimizer_mappers module

class AdamMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class MomentumMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class NovogradMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

medl.tools.mmar_converter.tf_mappers.post_transform_mappers module

class ArgmaxAcrossChannelsMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class CopyPropertiesMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class KeepLargestCCMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ProcessMulticlassPredsMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class RestoreOriginalShapeMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class SplitAcrossChannelsMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class SplitBasedOnLabelMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ThresholdValuesMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

medl.tools.mmar_converter.tf_mappers.spatial_transform_mappers module

class RandomAxisFlipMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class RandomRotate2DMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class RandomRotate3DMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class RandomSpatialFlipMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class RandomZoomMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ScaleByResolutionMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ScaleBySpacingMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ScaleToShapeMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class SmoothScaleToShapeMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

medl.tools.mmar_converter.tf_mappers.tf_mapper module

class CatchAllMapper

Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

is_supported_node(node: Dict) → bool

class ContextKeys

Bases: object

ACTIVATION_LAYER = 'activation_layer'

ARGMAX_MODEL_OUTPUT = 'argmax_model_output'

CONVERT_WARNING = 'convert_warning'

DO_LR_SCHEDULE = 'do_lr_schedule'

DO_VALIDATION = 'do_validation'

ENSURED_CHANNEL_FIRST = 'ensured_channel_first'

LABEL_SPLIT_CHANNELS = 'label_split_channels'

LABEL_SPLIT_CHANNELS_POSTFIX = 'label_split_channels_postfix'

LOGIT_THRESH_OUTPUT = 'logit_thresh_output'

METRICS_REPORT_PATH = 'metrics_report_path'

MODEL_INPUT_CHANNELS = 'model_input_channels'

MODEL_OUTPUT_CLASSES = 'model_output_classes'

NUM_EPOCHS = 'num_epochs'

ONE_HOT_TARGET = 'one_hot_target'

PRED_SPLIT_CHANNELS = 'pred_split_channels'

PRED_SPLIT_CHANNELS_POSTFIX = 'pred_split_channels_postfix'

SMART_CACHE_ENABLED = 'smart_cache_enabled'

SPLIT_CHANNELS = 'split_channels'

SPLIT_CHANNELS_POSTFIX = 'split_channels_postfix'

TRAIN_COMPUTE_METRICS = 'train_compute_metrics'

TRAIN_DO_STATS_PRINT = 'train_do_stats_print'

TRAIN_DO_TENSORBOARD = 'train_do_tensorboard'

VAL_COMPUTE_METRICS = 'val_compute_metrics'

VAL_DO_STATS_PRINT = 'val_do_stats_print'

VAL_DO_TENSORBOARD = 'val_do_tensorboard'

class TFMapper(node_name: str, target_name: Union[str, List[str]])

Bases: abc.ABC

is_supported_node(node: Dict) → bool

medl.tools.mmar_converter.tf_mappers.utility_transform_mappers module

class AddExtremePointsChannelMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class CastToTypeMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ConvertToChannelsFirstMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ConvertToChannelsLastMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ConvertToMultiChannelBasedOnBratsClassesMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ConvertToMultiChannelBasedOnLabelMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class MergeBatchDimsMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class PrintOutputObjectInfoMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class RemoveDataFieldsMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class RepeatChannelMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class ReplaceLabelsMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class SplitBasedOnBratsClassesMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

medl.tools.mmar_converter.tf_mappers.writer_mappers module

class WriteClassificationResultMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

class WriteNiftiMapper: Bases: medl.tools.mmar_converter.tf_mappers.tf_mapper.TFMapper

Module contents

© Copyright 2021, NVIDIA. Last updated on Feb 2, 2023.