PUBLICATIONS

Some of the projects that have used Clara Parabricks include:

  • Jeffrey Ng, Pankaj Vats, Elyn Fritz-Waters, Evin M. Padhi, Zachary L. Payne, Shawn Leonard, Stephanie Sarkar, Marc West, Chandler Prince, Lee Trani, Marshall Jansen, George Vacek, Mehrzad Samadi, Timothy T. Harkins, Craig Pohl, Tychele N. Turner, de novo variant calling identifies cancer mutation profiles in the 1000 Genomes Project

  • Franke KR, Crowgey EL. Accelerating next generation sequencing data analysis: an evaluation of optimized best practices for Genome Analysis Toolkit algorithms. Genomics Inform. 2020;

  • Osamu Ogasawara, Yuichi Kodama, Jun Mashima, Takehide Kosuge, Takatomo Fujisawa, DDBJ Database updates and computational infrastructure enhancement, Nucleic Acids Research, Volume 48, Issue D1, 08 January 2020, Pages D45–D50;

  • Tanjo, T., Kawai, Y., Tokunaga, K. et al. Practical guide for managing large-scale human genome data in research. J Hum Genet (2020).

  • Shinozaki-Ushiku, A., Ishikawa, S., Komura, D. et al. The first case of gastric carcinoma with NTRK rearrangement: identification of a novel ATP1B–NTRK1 fusion. Gastric Cancer 23, 944–947 (2020).

  • Ghose, Aruni et al. “The Emerging Role of Artificial Intelligence in the Fight Against COVID-19.” European urology, S0302-2838(20)30723-5. 17 Sep. 2020

  • Sam Friedman, Laura Gauthier, Yossi Farjoun, Eric Banks, Lean and deep models for more accurate filtering of SNP and INDEL variant calls, Bioinformatics, Volume 36, Issue 7, 1 April 2020, Pages 2060–2067