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Workload Management

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For clusters that have many users and a significant load, a workload manager (WLM) system allows a more efficient use of resources to be enforced for all users than if there were no such system in place. This is because without resource management, there is a tendency for each individual user to over-exploit common resources.

When a WLM is used, the end user can submit a job to it. This can be done interactively, but it is typically done as a non-interactive batch job.

The WLM assigns resources to the job, and checks the current availability as well as checking its estimates of the future availability of the cluster resources that the job is asking for. The WLM then schedules and executes the job based on the assignment criteria that the administrator has set for the WLM system. After the job has finished executing, the job output is delivered back to the user.

Among the hardware resources that can be used for a job are GPUs. Installing CUDA software to enable the use of GPUs is described in section 9 of the Installation Manual. Configuring GPU settings for BCM is described in section 3.17.2 of the Administrator Manual. Configuring GPU settings for an individual WLM is described in the section on getting that particular WLM up and running.

The details of job submission from a user’s perspective are covered in the User Manual.

Sections 7.1–7.5 cover the installation procedure to get a WLM up and running.

Sections 7.6 –7.7 describe how Base View and cmsh are used to view and handle jobs, queues and node drainage.

Section 7.8 shows examples of WLM assignments handled by BCM.

Section 7.9 describes the power saving features of WLMs.

Section 7.10 describes cgroups, a resources limiter, mostly in the context of WLMs.

Section 7.11 describes WLM customizations for settings other than the common settings covered by BCM.

7.1 Workload Managers Choices

Some WLM packages are installed by default, others require registration from the distributor before installation.

During cluster installation, a WLM can be chosen (figure 3.9 of the Installation Manual) for setting up. The choices are:

  • Slurm: Available as version 25.05 or 25.11. Slurm is a free (GPL) job scheduler, with commercial support.

  • LSF v10.1: IBM Spectrum LSF (Load Sharing Facility) version 10.1, is a further development of what used to be IBM Platform LSF.

  • None: For clusters that need no HPC job-scheduling.

The WLMs in the preceding list can also be chosen and set up later using the cm-wlm-setup tool (section 7.3).

After installation, if there are no major changes in the WLM for updated versions of the workload managers, then

  • WLMs that are packaged with BCM (Slurm) can have their packages updated using standard package update commands (yum update and similar). The installation and configuration of the WLM from the updated packages is carried out as described later on in this chapter.

  • WLMs such as LSF that are installed by picking up software from the vendor can be updated by following vendor guidelines.

7.2 Forcing Jobs To Run In A Workload Management System

Another preliminary step is to consider forcing users to run jobs only within the WLM system. Having jobs run via a WLM is normally a best practice.

For convenience, BCM defaults to allowing users to log in via ssh to a node, using the authorized keys files stored in each users directory in /home (section 2.3.2). This allows users to run their processes without restriction, that is, outside the WLM system. For clusters with a significant load this policy results in a sub-optimal use of resources, since such unplanned-for jobs disturb any already-running jobs.

Disallowing user logins to nodes, so that users have to run their jobs through the WLM system, means that jobs are then distributed to the nodes only according to the planning of the WLM. If planning is based on sensible assignment criteria, then resources use is optimized—which is the entire aim of a WLM in the first place.

7.2.1 Disallowing User Logins To Regular Nodes Via cmsh

The usernodelogin setting of cmsh restricts direct user logins from outside the WLM, and is thus one way of preventing the user from using node resources in an unaccountable manner. The usernodelogin setting is applicable to node categories only, rather than to individual nodes.

In cmsh the attribute of usernodelogin is set from within category mode:

Example

[root@basecm11 ~]# cmsh
[basecm11]% category use default
[basecm11->category[default]]% set usernodelogin onlywhenjob
[basecm11->category*[default*]]% commit

The attributes for usernodelogin are:

  • always (the default): This allows all users to ssh directly into a node at any time.

  • never: This allows no user other than root to directly ssh into the node.

  • onlywhenjob: This allows the user to ssh directly into the node when a job is running on it. It typically also prevents other users from doing a direct ssh into the same node during the job run, since typically the WLM is set up so that only one job runs per node. However, an ssh session that is already running is not automatically terminated after the job is done.

    • Some cluster administrators may wish to allow some special user accounts to override the onlywhenjob setting, for example for diagnostic purposes. Before giving the details of how to override the setting, some background explanation is probably useful:

      The onlywhenjob setting works with the PAM system, and adds the following line to /etc/pam.d/sshd on the regular nodes:

      account required pam_bright.so

      Nodes with the onlywhenjob restriction can be configured to allow a particular set of users to access them, despite the restriction, by allowing them with the PAM system, as follows: Within the software image <node image> used by the node, that is under /cm/images/ <node image>, the administrator can add the set of user accounts to the file etc/security/pam_bright.d/pam_allow.conf. This file is installed in the software image with a chroot installation (section 9.4) of the cm-libpam package.

      Groups of users can be allowed using the file etc/security/pam_bright.d/pam_allow_group.conf.

      Other adjustments to PAM configuration, such as the number of attempted logins and the associated wait time per login, can be carried by editing the /etc/security/pam_bright.d/cm-check-alloc.conf file.

      The image can then be updated to allow the users, by running the imageupdate command in cmsh (section 5.6.2), or by clicking the Update node option in Base View (section 5.6.3).

7.2.2 Disallowing User Logins To Regular Nodes Via Base View

In Base View, user node login access is set via a category setting, for example for the default category via the navigation path in figure 7.1: Grouping > Categories[default] > > Settings > User node login

Disallowing user logins to nodes via Base View

Figure 7.1: Disallowing user logins to nodes via Base View

7.2.3 Disallowing Other User Processes Outside Of Workload Manager User Processes

Besides disabling user logins, administrators may choose to disable interactive jobs in the WLM as an additional measure to prevent users from starting jobs on other nodes.

Administrators may also choose to set up scripts that run after job execution. Such scripts can terminate user processes outside the WLM, as part of a policy, or for general administrative hygiene. These are Epilog scripts and are part of the WLM.

The WLM documentation has more on configuring these options.

7.2.4 High Availability By Workload Managers

NVIDIA Base Command Manager uses the existing built-in high availability (HA) functionalities of workload managers as much as possible. A double server HA configuration with the existing built-in HA functionality can be carried out using the cm-wlm-setup utility (section 7.3), or using the Base View HA wizard (section 7.4.1). The built-in functionality makes use of the primary WLM server and secondary WLM server, which are placed on separate nodes.

The HA configuration aspect (section 15.1.3) in this case means that a WLM server role is assigned to both the WLM primary and the WLM secondary nodes. These primary WLM and secondary WLM servers can then:

  • both be on head nodes,

  • both be on regular (compute) nodes

It is not possible to configure a mixed setup—that is with one head node and one regular node—for the WLM servers on an HA setup.

In a non-HA cluster, the WLM primaryserver value is set to the head node by default.

Example

[head->wlm[slurm]]% get primaryserver
head

This is because NVIDIA Base Command Manager always configures the primary WLM server on the primary cluster head node.

If both the head nodes are configured with the WLM server roles, then the WLM primaryserver value is set to the primary cluster head node. This is because NVIDIA Base Command Manager always configures the primary WLM server on the primary cluster head node, and the backup WLM server on the secondary head node.

Example

[head1->wlm[slurm]]% get primaryserver
head1
[head1->wlm[slurm]]% exit
root@head1:~# ssh head2 "cmha makeactive"
...
...[logging into the newly active head node, and checking where the primary server is:]...
[head2->wlm[slurm]]% get primaryserver
head1

If the parameter primaryserver is unset in wlm mode, and the Slurm server role is assigned to the head nodes, then the slurmctld service is always started on both head nodes. During a failover, the Slurm configuration is regenerated and both slurmctld services are restarted. The primary slurmctld is always on the active head node.

If two regular nodes are configured with the WLM server roles instead, then in the cluster entity configuration the primaryserver parameter is set to one of the compute nodes.

The cluster primary head node and the WLM primary server should not be confused. In particular, the active cluster head node and active workload manager server are not necessarily the same for the case of the Slurm or LSF workload managers. For these, if the passive cluster head node becomes an active cluster head node without a crash, then this does not trigger a passive WLM server on the newly active head node to also become an active WLM server. Thus, the WLM server can be active on a passive head node, and vice versa, because the WLM primary server is independent of the cluster primary head node.

7.2.4.1 Slurm High Availability, scontrol takeover And slurmstartpolicy

This section considers some Slurm high availability issues on running scontrol takeover with BCM integration.

Logical steps during the Slurm takeover between head nodes: Slurm high availability normally waits a short while with moving its control activity over to a passive head node that has just been made active. After a short delay, the Slurm failover algorithm is followed so that the Slurm controller (slurmctld) takes over operations on the newly active head node.

Slurm can speed up takeover by running scontrol takeover from the Bash shell on the node with the secondary slurmctld. Running scontrol takeover stops the primary slurmctld and triggers the Slurm failover algorithm.

This can be useful if the administrator wants to carry out maintenance on the usually active head node. Carrying out the takeover lets the Slurm service remain available, and stops the Slurm primary controller following the newly active head node.

The logic on how this works in BCM is:

  1. The production state starts with

    • an active primary

    • a passive secondary

    • the primary head node set up as the primary Slurm controller

  2. the administrator runs cmha makeactive on the secondary passive. This causes the following to happen:

  • scontrol takeover is run by CMDaemon on the secondary passive

  • CMDaemon goes into the passive state on the primary node, and slurmctld on the primary node stops

  • CMDaemon goes into the active state on the secondary node, and slurmctld on the secondary node starts

  1. there is no interruption in Slurm services, because with scontrol takeover CMDaemon has forced the backup slurmctld to take over

  2. the administrator can now carry out maintenance on the primary (now passive) head node

  3. once maintenance has been completed, the administrator can optionally reboot the primary (passive) head node, and then make it active again with cmha makeactive to get back to the original production state

The problem with the preceding logic is that by default BCM automatically restarts a stopped slurmctld that it notices. This means that the results of scontrol takeover in steps 2 and 3 are unknown if carried out manually. That is, it is not practical to run the scontrol takeover command directly from Bash because it is possible to unintentionally configure the primary and backup slurmctld with an incorrect status.

To deal with this problem cleanly, CMDaemon provides the slurmctldstartpolicy parameter, described next.

The slurmctldstartpolicy parameter and Slurm takeover behavior: The slurmctldstartpolicy parameter can take the following values to decide the slurmctld behavior during scontrol takeover:

  • TAKEOVER: The default value on an HA cluster.

  • ALWAYS: The default value on a non-HA cluster.

  • ACTIVEONLY: Useful only if /cm/shared is not mounted on both head nodes at the same time. For example, as in DAS (Direct Attached Storage), which should never be used anyway for shared storage in a production system.

  1. If within NVIDIA Base Command Manager, in the SlurmServerRole, the slurmctldstartpolicy parameter is set to TAKEOVER, then disabling the automatic restart of the slurmctld service is unnecessary:

    [root@basecm11 ~]# cmsh
    [basecm11-]% configurationoverlay
    [basecm11-]>configurationoverlay]% use slurm-server
    [basecm11->configurationoverlay[slurm-server]]% roles
    [basecm11->configurationoverlay[slurm-server]->roles]% use slurmserver
    [basecm11->configurationoverlay[slurm-server]->roles[slurmserver]]% set slurmctldstartpolicy TAKEOVER
    [basecm11->configurationoverlay*[slurm-server*]->roles*[slurmserver*]]% commit

    The setting value can be cleared with:

    [basecm11->configurationoverlay[slurm-server]->roles[slurmserver]]% set slurmctldstartpolicy ALWAYS
    [basecm11->configurationoverlay*[slurm-server*]->roles*[slurmserver*]]% commit
  2. If cm-wlm-setup installs Slurm on an HA cluster, then the slurmctldstartpolicy parameter can be set in one of the TUI screens during the session. Before HA is configured, the parameter has a default value of ALWAYS. After HA is configured it has a default value of TAKEOVER. The default value of TAKEOVER causes prefailoverscript in the failover submode (section 15.4.6) to take the value /cm/local/apps/cmd/scripts/slurm.takeover.sh

  3. If cm-wlm-setup installs Slurm on a non-HA cluster, then the prefailoverscript parameter must be set within the failover submode of partition mode:

    [basecm11->partition[base]->failover]% set prefailoverscript /cm/local/apps/cmd/scripts/slurm.takeover.sh
    [basecm11->partition*[base*]->failover*]% commit

    This ensures that the active head node is taken over by Slurm during a change of the active head node.

The takeover is temporary. If the head node which has the Slurm primary slurmctld on it is restarted, or if the service itself is restarted manually, then the primary slurmctld takes back its role, as per Slurm documentation.

For a Slurm cluster with a single slurmctld, where the Slurm server role is assigned to a single compute node or the BCM cluster has only one head node, the parameter slurmctldstartpolicy should be set to ALWAYS, which is the default.

Table 7.2.4.1 shows what slurmctld does when the slurmctldstartpolicy parameter is set to TAKEOVER and when in SlurmWlmCluster the parameter primaryserver is set. The detailed behavior per head node depends on whether the head nodes are active or primary:

Node pairIs slurmctldstartpolicy TAKEOVER?Active node?Slurm primary node?slurmctld starts?
Head001no**yes
Head002no**yes
Head001yesyesyesyes
Head002yesnonoyes
Head001yesyesnoyes
Head002yesnoyesno
Head001yesnoyesno
Head002yesyesnoyes
Head001yesnonoyes
Head002yesyesyesyes

* any value of yes or no


Table 7.2.4.1 slurmctldstartpolicy parameter and slurmctld

Slurm controller high availability on compute nodes: If the Slurm server role is assigned to two compute nodes, the TAKEOVER policy is configured automatically only when both nodes belong to a failover group. In this configuration, slurmctld does not start on the primary node while the secondary node is active.

7.3 Installation Of Workload Managers

Normally the administrator selects a WLM to be used during BCM installation (figure 3.9 of the Installation Manual). A WLM may however also be added and configured after BCM has been installed, by using cm-wlm-setup, which is part of the cm-setup package, or by using the Base View WLM wizard.

With most other objects, BCM front ends—cmsh and Base View—can be used to create a new object from scratch, or can clone a new object from another existing object. However, the front ends cannot do this for a WLM object. An attempt to create or clone a new WLM object using cmsh or Base View is prohibited by the front ends, because there are many pitfalls possible in configuration.

A new WLM object, and WLM instance, can therefore only be installed via cm-wlm-setup, the Base View WLM wizard, or by selecting a WLM during the initial BCM installation.

7.3.1 Running cm-wlm-setup In CLI Mode

The recommended way to run the cm-wlm-setup utility is without options or arguments, in which case a TUI dialog starts up. A TUI session run with cm-wlm-setup is covered in section 7.3.2.

However, the cm-wlm-setup utility can alternatively be used in a non-GUI, command-line, mode, with options and arguments. The utility has the following usage:

[root@basecm11 ~]# cm-wlm-setup -h
usage: Workload manager setup cm-wlm-setup [-c <config_file>]
[--setup | --disable]
[--wlm <name>]
[--server-nodes SERVER_NODES]
[--server-primary SERVER_PRIMARY]
[--server-overlay-name SERVER_OVERLAY_NAME]
[--server-overlay-priority SERVER_OVERLAY_PRIORITY]
[--client-categories CLIENT_CATEGORIES]
[--client-nodes CLIENT_NODES]
[--client-overlay-name CLIENT_OVERLAY_NAME]
[--client-overlay-priority CLIENT_OVERLAY_PRIORITY]
[--client-slots <slots>]
[--submit-categories SUBMIT_CATEGORIES]
[--submit-nodes SUBMIT_NODES]
[--submit-overlay-name SUBMIT_OVERLAY_NAME]
[--submit-overlay-priority SUBMIT_OVERLAY_PRIORITY]
[--wlm-cluster-name WLM_CLUSTER_NAME]
[--reboot] [--reset-cgroups]
[--yes-i-really-mean-it]
[--archives-location <path>]
[--license <license>] [--purge]
[--accounting-overlay-name ACCOUNTING_OVERLAY_NAME]
[--accounting-overlay-priority ACCOUNTING_OVERLAY_PRIORITY]
[--with-pyxis]
[--add-pyxis]
[--reinstall-pyxis]
[--remove-pyxis]
[--pyxis-data-directory <path>]
[--nvidia-gpus NVIDIA_GPUS] [-v]
[--no-distro-checks] [--json]
[--output-remote-execution-runner]
[--on-error-action {debug,remotedebug,undo,abort}]
[--skip-packages]
[--min-reboot-timeout <reboot_timeout_seconds>]
[--allow-running-from-secondary]
[--dev] [-h]

The help output from running cm-wlm-setup -h continues on beyond the preceding text output, and presents more options.

These options can be grouped as follows:

7.3.1.1 Optional Arguments

  • --setup: Helps set up a server, enable roles, and create the default queues/partitions

  • --disable: Disable WLM services

  • -h, --help: Displays the help screen

7.3.1.2 Common Arguments

  • -c <YAML configuration file>: Loads a runtime configuration for plugins, from a YAML configuration file.

7.3.1.3 Options For Installing Or Managing A WLM

  • --wlm <WLM name>: Specifies which WLM is to be set up. Choices for <WLM name> are:

    • slurm

    • lsf

  • --wlm-cluster-name <WLM cluster name>: Specifies the name for the new WLM cluster that is to be set up.

  • --reboot: Reboot after install

7.3.1.4 Server Role Settings

  • --server-nodes <server nodes>: Sets the server roles of the WLM to the value set for <server nodes>, which is a comma-separated list of nodes. Default value: HEAD, which is a reserved name for the head node.

  • --server-primary <primary server>: Sets the hostname used for the primary server to <primary server>. Default name: HEAD.

  • --server-overlay-name <server overlay name>: Sets the server role configuration overlay name to <server overlay name>. Default name: <WLM name>-server, where <WLM name> is the name specified in the --wlm option.

  • --server-overlay-priority <server overlay priority>: Sets the server role configuration overlay priority to <server overlay priority>. Default value: 500.

7.3.1.5 Client Role Settings

  • --client-categories <client categories>: Sets the client roles of the WLM to the value set for <client categories nodes>, which is a comma-separated list of node categories. Default value: default.

  • --client-nodes <client nodes>: Sets the client roles of the WLM to the value set for <client nodes>, which is a comma-separated list of nodes. No value set by default.

  • --client-overlay-name <client overlay name>: Sets the client role configuration overlay name to <client overlay name>. Default name: <WLM name>-client, where <WLM name> is the name specified in the --wlm option.

  • --client-overlay-priority <client overlay priority>: Sets the client role configuration overlay priority to <client overlay priority>. Default value: 500.

  • --client-slots <slots>: Sets the number of slots on the client to <slots>.

7.3.1.6 Submit Role Settings

  • --submit-categories <submit categories>: Sets the submit roles of the WLM to the value set for <submit categories nodes>, which is a comma-separated list of node categories that are submit nodes. Default value: default.

  • --submit-nodes <submit nodes>: Sets the submit roles of the WLM to the value set for <submit nodes>, which is a comma-separated list of submit nodes. No value set by default.

  • --submit-overlay-name <submit overlay name>: Sets the submit role configuration overlay name to <submit overlay name>. Default name: <WLM name>-submit, where <WLM name> is the name specified in the --wlm option.

  • --submit-overlay-priority <submit overlay priority>: Sets the submit role configuration overlay priority to <submit overlay priority>. Default value: 500.

7.3.1.7 Disable Options

  • --reset-cgroups: Disable joining cgroup controllers with systemd setting JoinControllers

  • --yes-i-really-mean-it: Required for additional safety

7.3.1.8 Workload Manager Specific Options

  • --archives-location <path>: Set the directory path for the archive files, only for LSF. This parameter is mandatory for LSF installation.

  • --license <path>: Set the path to the LSF license.

  • --purge: Remove the directories on disable, for LSF.

7.3.1.9 Slurm Accounting Role Settings

  • --accounting-overlay-name <accounting overlay name>: Sets the accounting role configuration overlay

  • --accounting-overlay-priority <accounting overlay priority>: Sets the accounting role configuration overlay priority to <accounting overlay priority>. Default value: 500.

7.3.1.10 Slurm Pyxis Settings

  • --add-pyxis: Add Pyxis to an existing cluster

  • --reinstall-pyxis: Reinstall or upgrade Pyxis on all the clusters using it

  • --remove-pyxis: Remove Pyxis from an existing cluster

  • --with-pyxis: Enable Pyxis

  • --pyxis-data-directory <path>: Sets directory where images will be stored

7.3.1.11 Slurm GPU Settings

  • --nvidia-gpus <NVIDIA GPUs specification>: Sets the NVIDIA GPUs that will be used in the configuration, specifying type and number of GPUs. For example: --nvidia-gpus=A100:4

  • --gpu-client-nodes <NVIDIA GPU client nodes>: Sets a comma-separated list of nodes assigned to the GPU overlay.

  • --gpu-client-categories <NVIDIA GPU client categories>: Sets a comma-separated list of node categories assigned to the GPU overlay.

7.3.1.12 Advanced Options

  • -v, --verbose: This displays a more verbose output. It can be helpful in troubleshooting.

  • --no-distro-checks: Disables distribution checks based on ds.json.

  • --json: Use json formatting for logs printed to STDOUT.

  • --output-remote-execution-runner: Format output for CMDaemon.

  • --on-error-action {debug,remotedebug,undo,abort}: Upon encountering a critical error, instead of asking the user for choice, the setup will do the selected action.

  • --skip-packages: Skip the stages which install packages. Requires packages to be already installed.

  • --min-reboot-timeout <timeout>: How long to wait for nodes to finish reboot, in seconds. Minimum value: 300. Default value: 300.

  • --allow-running-from-secondary: Allow the wizard to be run from the secondary when it is the active head node.

  • --dev: Enables additional command line arguments for developers.

7.3.2 Running cm-wlm-setup As A TUI

Running cm-wlm-setup with no options and with no arguments brings up a TUI screen (figure 7.2).

cm-wlm-setup TUI initial screen

Figure 7.2: cm-wlm-setup TUI initial screen

7.3.2.1 Express Installation

The Setup (Express) menu option allows the administrator to select the workload manager in the next screen (figure 7.3), and to install it with a minimal number of configuration steps. If it has already been installed, but disabled using cm-wlm-setup, then it can also be re-enabled, instead of installed from scratch.

cm-wlm-setup TUI WLM selection screen

Figure 7.3: cm-wlm-setup TUI WLM selection screen

7.3.2.2 Step-by-step Installation

If the Setup (Step By Step) menu option is chosen instead of the express option, then this also allows the administrator to select the workload manager in figure 7.3. But after selection, there are a number of extra configuration steps that can be carried out which are not available in the express configuration. Guidance is given for these extra steps, and sensible default values are already filled in for many options.

One part of the step-by-step session involves assigning the WLM client role to the compute nodes of the cluster. Only the non-GPU compute nodes should be assigned the (standard, non-GPU) WLM client role. The GPU compute nodes are assigned a GPU WLM client role in the section of the TUI wizard that deals with GPU configuration.

The WLM client role is assigned to the entire category—the default category— of non-head nodes by default (figure 7.4):

Slurm with cm-wlm-setup: WLM Client role category configuration screen

Figure 7.4: Slurm with cm-wlm-setup: WLM Client role category configuration screen

The WLM client role can be assigned to selected nodes only by setting the default category checkbox to blank, and then selecting the non-GPU nodes in the following screen. For example, as illustrated in figure 7.4, where the standard, non-GPU nodes are node002 and node003:

Slurm with cm-wlm-setup: WLM client role node configuration screen

Figure 7.5: Slurm with cm-wlm-setup: WLM client role node configuration screen

7.3.2.3 GPU Configuration Screens

The GPU configuration screens are extra steps available during a Setup (Step By Step) session. The GPU configuration steps are discussed summarily in the quickstart section for GPUs, here.

The GPU configuration steps are covered in this section in more detail:

After configuring the WLM server, WLM submission and WLM client roles for the nodes of the cluster, a screen that asks if GPU resources should be configured is displayed (figure 1.1):

Slurm With cm-wlm-setup: GPU Configuration Entry Screen

Figure 1.1: Slurm With cm-wlm-setup: GPU Configuration Entry Screen

Following through brings up a GPU device settings configuration screen (figure 1.2):

Slurm With cm-wlm-setup: GPU Device Settings Configuration Screen

Figure 1.2: Slurm With cm-wlm-setup: GPU Device Settings Configuration Screen

The help text option in the screen gives hints based on the descriptions at https://slurm.schedmd.com/gres.conf.html, and also as seen in Slurm’s man gres.conf.5.

Figure 1.2 shows 2 physical GPUs on the node being configured. The type is an arbitrary string for the GPU, and each CPU core is allocated an alias GPU device.

The next screen (figure 1.3) allows the NVIDIA CUDA MPS (Multi-Process Service) to be configured:

Configuring An NVIDIA GPU For Slurm With cm-wlm-setup: MPS Settings Configuration Screen

Figure 1.3: Configuring An NVIDIA GPU For Slurm With cm-wlm-setup: MPS Settings Configuration Screen

The help text for this screen gives hints on how the fields can be filled in. The number of GPU cores (figure 1.3) for a GPU device can be set.

Further screens allow:

  • the configuration overlay (section 2.1.6) name to be set for the GPU WLM clients. By default the name is set to slurm-client-gpu.

  • a GPU WLM client role to be assigned to a category, if, for example, all the GPU nodes have been given their own category.

  • the GPU WLM client role to be assigned to individual nodes instead of to a category.

  • a configuration overlay priority to be set for a GPU WLM client role. By default, this has a value of 450.

  • automatic GPU detection, with the following options:

    • BCM autodetects GPUs

    • Slurm autodetects NVIDIA GPU details

    • Slurm autodetects AMD GPU details

    • Slurm autodetects Intel GPU details

    • Slurm autodetects AWS Trainium/Inferentia devices

    • Manual GPU configuration in cm-wlm-setup

    • Skip GPU configuration

7.3.2.4 Slurm Accounting Database Configuration

In the step-by-step configuration for the Slurm WLM, after the server and client parameters have been set, the Slurm accounting database configuration can be set.

This requires setting:

  • one or two accounting nodes

  • a primary accounting node

All nodes must be reachable from slurmctld.

The accounting nodes can be set with the Select accounting nodes screen (figure 7.9):

cm-wlm-setup selection of accounting nodes

Figure 7.9: cm-wlm-setup selection of accounting nodes

Head nodes and compute nodes cannot be mixed for the accounting nodes. If two accounting nodes are set, then the slurmdbd high availability configuration is automatically set up.

The primary accounting node—that is, the node that is AccountingStorageHost in slurm.conf—can then be set in the Select the primary accounting server node screen (figure 7.10):

cm-wlm-setup selection of primary accounting node

Figure 7.10: cm-wlm-setup selection of primary accounting node

The other accounting node is automatically set to be AccountingStorageBackupHost.

The type of node on which the slurmdbd database runs can then be set (figure 7.11):

cm-wlm-setup selection of the type of node on which the Slurm accounting database runs

Figure 7.11: cm-wlm-setup selection of the type of node on which the Slurm accounting database runs

Only two of the three options are offered at a time. Which options are offered is determined by the accounting node selection made on the preceding screen. The accounting nodes are either all head nodes or all compute nodes. A mixed selection is rejected.

  • If Use accounting node is selected, then the database is stored on the primary accounting node. This option is offered when the accounting nodes are head nodes

  • If Select cluster node is selected, then the next screen allows the selection of the BCM MySQL overlay which is used to manage the database (figure 7.12). This option is offered when the accounting nodes are compute nodes, that is, when slurmdbd is offloaded from the head nodes. Whether the head nodes are configured for high availability makes no difference. If no MySQL configuration overlay is found, then the selection is rejected, and MySQL must first be installed with cm-mysql-setup. If the MySQL installation is running on more than one node (section 14.12), then mysql-router is automatically installed on all accounting nodes.

cm-wlm-setup Selection of host(s) for where the Slurm accounting database used by slurmdbd is stored

Figure 7.12: cm-wlm-setup Selection of host(s) for where the Slurm accounting database used by slurmdbd is stored

  • If Select external node is selected, then a non-BCM hostname is asked for, and the cluster administrator is responsible for the installation and configuration of the DBMS. This option is always offered

Modifying the settings after installation is discussed here.

7.3.2.5 Disabling An Installation

The Disable option in figure 7.2 allows the administrator to disable an existing instance.

7.3.2.6 Summary Screen

The screen that appears after the configuration steps are completed, is the Summary screen (figure 7.13). This screen allows the configuration to be viewed, saved, or saved and deployed.

cm-wlm-setup TUI summary screen

Figure 7.13: cm-wlm-setup TUI summary screen

In the final summary screen, as with other scripts that come with the cm-setup package, the configuration setting can be one of the following kinds:

  • minimal config: For this minimal kind of configuration setting, the configuration consists only of the settings that differ from the default application configuration. The remaining default application configuration settings are not included in the configuration.

  • config: For this non-minimal kind of configuration setting, the configuration consists of the minimal configuration settings (the ones changed by BCM), as well as the remaining default configuration settings (the ones provided with the application). That is to say: the remaining default configuration application settings are included in the configuration. The default application configuration settings may change as the upstream packages change.

If deployment is carried out, then several screens of output are displayed. After the deployment is completed, the log file can be viewed at /var/log/cm-wlm-setup.log.

7.3.3 Installation And Configuration Of Enroot And Pyxis With Slurm To Run Containerized Jobs

7.3.3.1 What Is Enroot?

As the README file for Enroot says, Enroot is an open source tool to turn container images into unprivileged sandboxes. Enroot can be thought of as an enhanced unprivileged chroot. It uses user and mount namespaces, as well as other modern kernel features, in order to create such sandboxes. It uses the same underlying technologies as containers, but removes much of the isolation that they inherently provide, while preserving filesystem separation. Further details on Enroot can be found at https://github.com/NVIDIA/enroot.

Enroot can be used with different workload managers, but for now only Slurm has been tightly integrated.

7.3.3.2 What Is Pyxis?

Pyxis (https://github.com/NVIDIA/pyxis) is a SPANK plugin for Slurm. SPANK (Slurm Plug-in architecture for Node and job (K)control, man spank.8) is a generic interface for job launch code control in Slurm. The Pyxis plugin requires the Enroot utility, and allows the user’s jobs to be executed seamlessly over Enroot in unprivileged containers. The plugin enables the Slurm submission utilities to provide container-related command line options.

7.3.3.3 Enroot And Pyxis Packages

BCM provides two Enroot package flavors: standard and hardened. The standard binaries are compiled as follows:

  • Open file descriptors are inherited

  • Spectre variant 2 (IBPB/STIBP) mitigations are disabled

  • Spectre variant 4 (SSBD) mitigations are disabled

As a rule of thumb: the hardened flavor is slightly more secure but suffers a larger overhead.

  • The standard packages are already installed by default with BCM, and are:

    • enroot: provides the main utility and helper files.

    • enroot+caps: a nearly empty package which runs a post-installation script to grant extra capabilities to unprivileged users. This allows them to import and convert container images.

    • pyxis-sources: installs a tarball with the Pyxis plugin source files. The tarball is used by cm-wlm-setup to compile the Pyxis plugin on a cluster. The version of the package (section 9.1), found using yum info pyxis-sources or apt-cache show pyxis-sources, implies the Pyxis source version that is provided. For example: pyxis-sources-0.20.0-[...].rpm provides the Pyxis source for version 0.20.0.

  • The hardened packages that can be installed from the BCM repositories to replace the standard enroot and enroot+caps are:

    • enroot-hardened: provides hardened main utility and helper files.

    • enroot-hardened+caps: Provides extra capabilities to unprivileged users so that they can import and convert containers themselves.

The package pyxis-sources installs the tarball at /cm/local/apps/slurm/var/pyxis/pyxis-sources.tar.gz. If the administrator needs a version of Pyxis other than the one provided by the package, then the archive can be replaced with a source tarball of the same name.

7.3.3.4 How Are Enroot And Pyxis Set Up In BCM?

Pyxis and Enroot can be set up or removed by the administrator by choosing the appropriate options when Slurm is set up. In order to choose the appropriate options, cm-wlm-setup can be run in step-by-step mode (here). Alternatively, Pyxis-related command line options can be specified for the cm-wlm-setup arguments --add-pyxis and --reinstall-pyxis.

The step-by-step mode eventually presents a screen where the Pyxis setup can be enabled using a plugin:

cm-wlm-setup Pyxis setup screen

Figure 7.14: cm-wlm-setup Pyxis setup screen

The Pyxis screen is available for RHEL8-based systems and Ubuntu 20 and beyond. Older systems are not supported.

If the plugin is enabled in the Pyxis setup screen, then cm-wlm-setup installs the enroot and enroot+caps packages from https://github.com/NVIDIA/enroot/releases into the software images where the Slurm client role is to be assigned. The cm-wlm-setup uitility also installs them directly on the head node if the head node was selected to run jobs. Pyxis sources are downloaded from GitHub, compiled with the installed Slurm, and installed in the appropriate Slurm directory.

If the administrator enables the Pyxis plugin, then a new screen with Enroot settings is shown:

cm-wlm-setup Enroot settings screen

Figure 7.15: cm-wlm-setup Enroot settings screen

The Enroot settings have reasonable default values. The administrator can change these:

  • Share raw images among users and nodes: If enabled, then the raw container image is shared among users and nodes, and the administrator must ensure that the cache directory is shared among all the compute nodes. Enabling the option disables the creation of a UID subdirectory by the Enroot prolog script.

    The following points about implementing Enroot cache sharing should be considered by the administrator:

    • Enabling the checkbox for the option normally changes the default value of the Enroot cache directory, as defined in the TUI in the Cache directory field, to ${XDG_CACHE_HOME}/enroot. This field is normally evaluated by the Enroot installation to the home directory of the user:

      ~/.cache/enroot

      when a job is executed.

      The default value can also be changed in the TUI to any shared directory. If the specified directory does not exist, then cm-wlm-setup creates it with Unix directory permissions set to chmod 00777, which allows all users to share container images in the cache with each other on all the nodes. The extra 0 prefix is a non-POSIX-compliant GNU/Linux extension that clears the SUID and SGID bits so that users do not get elevated privileges simply through sharing the images.

    • Restrictions can be placed on the ability of regular users to share images and to create files in the cache, by setting more restrictive permissions for the directory manually, after the cm-wlm-setup run.

      For example, the permissions can be set to 00770, while the ownership group of the directory is changed to a group with all the Pyxis users in it. In this case, only the users within the Pyxis users group can create the image layers in the cache.

    • An alternative to cache sharing of images among users and nodes is to save Squashfs images in a shared directory, outside the cache. Then the users can specify a full path to a shared Squashfs image on the cluster in the srun/sbatch command line. In this case there is no need to share the cache among the nodes, as the Squashfs images are not copied over to cache before execution.

    Only the administrator should have access to updating the image.

  • Share unpacked container images among nodes: Enables sharing of unpacked container images (image filesystems) among nodes. A user job can modify the filesystem, so it is not recommended to share this directory among users.

    Enabling the option disables removal of the Enroot data directory, if the container name is specified. This allows a user to keep the container filesystem between jobs run by the user. It is up to the user or the administrator to clean up the data directory if the option is enabled.

    If the data directory is shared among nodes, then it is up to a user to ensure that the container filesystem is unpacked at least once before real jobs start. Otherwise, a race condition is possible when the images are extracted simultaneously on several nodes.

  • Cache directory: Path to the cache directory where raw container image layers are stored.

    If the directory is not shared, then the Slurm prolog script creates a subdirectory with a name that is the job user ID, while epilog cleans up that subdirectory. If the directory is shared, then neither prolog nor epilog touches the directory.

  • Data directory: Directory where the container filesystems (unpackaged images) are stored. If the directory is shared, then the epilog script checks if the container name is specified for the job, and skips removal of the container subdirectory.

  • Runtime directory: A working directory with temporary files created by Enroot.

When Pyxis is set up, cm-wlm-setup also prepares the following configuration files for the compute nodes:

  • /etc/enroot/enroot.conf: This is a symlink to /cm/shared/apps/slurm/etc/enroot.conf. The configuration file provides reasonable default settings that allows Enroot to be used by many users. Important settings in the file are:

    • ENROOT_RUNTIME_PATH: working directory for enroot, created per user. Default value: /run/enroot/runtime/$(id -u)

    • ENROOT_CACHE_PATH: directory where container layers are stored. Default value: /run/enroot/cache/$(id -u)

    • ENROOT_DATA_PATH: directory where the filesystems of running containers are stored. Default value: /run/enroot/data/$(id -u)

    • ENROOT_SQUASH_OPTIONS: options passed to mksquashfs to produce container images. Default value: -noI -noD -noF -noX -no-duplicates

    • ENROOT_MOUNT_HOME: mount the current user’s home directory by default. Default value: yes.

    The administrator can change the symlink, or replace the file with a customized enroot.conf, if other values are preferred.

  • /etc/sysctl.d/80-enroot.conf: symlink to /cm/shared/apps/slurm/etc/enroot-sysctl.conf. The file tunes sysctl parameters for Enroot.

  • /cm/local/apps/slurm/var/prologs/50-prolog-enroot.sh: symlink to /cm/shared/apps/slurm/prologs/prolog-enroot.sh. This is the slurmd prolog that creates appropriate directories, with appropriate user permissions, that are used by Enroot.

  • /cm/local/apps/slurm/var/epilogs/50-epilog-enroot.sh: symlink to /cm/shared/apps/slurm/epilogs/epilog-enroot.sh. Cleans the user directories used by Enroot.

When cm-wlm-setup finishes its Pyxis configuration run, then there is no need for the nodes to be rebooted. The plugin works immediately.

The new Slurm submission command option names start with either --container or --no-container. The full list of options can be displayed with the --help option. For example:

Example

[user@basecm11 ~]$ srun --help | grep container
--container Path to OCI container bundle
--container-image=[USER@][REGISTRY#]IMAGE[:TAG]|PATH
[pyxis] the image to use for the container
--container-mounts=SRC:DST[:FLAGS][,SRC:DST...]
[pyxis] bind mount[s] inside the container. Mount
--container-workdir=PATH
[pyxis] working directory inside the container
--container-name=NAME [pyxis] name to use for saving and loading the
container on the host. Unnamed containers are
containers are not. If a container with this name
already exists, the existing container is used and
--container-save=PATH [pyxis] Save the container state to a squashfs
--container-mount-home [pyxis] bind mount the user's home directory.
--no-container-mount-home
--container-remap-root [pyxis] ask to be remapped to root inside the
container. Does not grant elevated system
--no-container-remap-root
[pyxis] do not remap to root inside the container
--container-entrypoint [pyxis] execute the entrypoint from the container
--no-container-entrypoint
container image
--container-writable [pyxis] make the container filesystem writable
--container-readonly [pyxis] make the container filesystem read-only

Simple installation validation:

The simplest way to validate the Pyxis/Enroot setup after Slurm setup is to try out an srun command:

Example

[user@basecm11 ~]$ module load slurm
[user@basecm11 ~]$ srun --container-image=ubuntu grep PRETTY /etc/os-release
pyxis: importing docker image: ubuntu
PRETTY_NAME="Ubuntu 24.04.2 LTS"

A more thorough installation validation: In order to perform a more thorough test of Pyxis/Enroot, an NCCL-based test can be used. NCCL is the NVIDIA Collective Communications Library (https://docs.nvidia.com/deeplearning/nccl), which is a library of multi-GPU collective communication primitives. The test can be found at https://github.com/NVIDIA/nccl-tests. A prebuilt container image, with the NCCL test already installed, can be started as shown in the example that follows.

It should be noted that running a multi-tenant cluster with all the export flags enabled as in the example may compromise security. It is therefore not recommended as a standard configuration.

Example

[user@basecm11 ~]$ module load slurm
[user@basecm11 ~]$ srun --export="NCCL_DEBUG=INFO,NCCL_IB_DISABLE=1,PMIX_MCA_gds=hash" -N 2 \
--ntasks-per-node=1 --gpus-per-task=1 --mpi=pmix --container-image=deepops/mpi-nccl-test \
/nccl_tests/build/all_reduce_perf -b 1M -e 4G -f 2 -g 1
pyxis: imported docker image: deepops/mpi-nccl-test
pyxis: imported docker image: deepops/mpi-nccl-test
# nThread 1 nGpus 1 minBytes 1048576 maxBytes 4294967296 step: 2(factor) warmup iters: 5 iters: 20 validation: 1
#
# Using devices
# Rank 0 Pid 175945 on node001 device 0 [0x00] Tesla V100-SXM3-32GB
# Rank 1 Pid 180379 on node002 device 0 [0x00] Tesla V100-SXM3-32GB
node001:175945:175945 [0] NCCL INFO Bootstrap : Using ens3:10.141.0.5<0>
node001:175945:175945 [0] NCCL INFO NET/Plugin : No plugin found (libnccl-net.so), using internal implementation
node001:175945:175945 [0] NCCL INFO NCCL_IB_DISABLE set by environment to 1.
node001:175945:175945 [0] NCCL INFO NET/Socket : Using [0]ens3:10.141.0.5<0>
node001:175945:175945 [0] NCCL INFO Using network Socket
NCCL version 2.11.4+cuda11.6
node002:180379:180379 [0] NCCL INFO Bootstrap : Using ens3:10.141.0.6<0>
node002:180379:180379 [0] NCCL INFO NET/Plugin : No plugin found (libnccl-net.so), using internal implementation
node002:180379:180379 [0] NCCL INFO NCCL_IB_DISABLE set by environment to 1.
node002:180379:180379 [0] NCCL INFO NET/Socket : Using [0]ens3:10.141.0.6<0>
node002:180379:180379 [0] NCCL INFO Using network Socket
node002:180379:182573 [0] NCCL INFO Trees [0] -1/-1/-1->1->0 [1] 0/-1/-1->1->-1
node001:175945:177561 [0] NCCL INFO Channel 00/02 : 0 1
node001:175945:177561 [0] NCCL INFO Channel 01/02 : 0 1
node001:175945:177561 [0] NCCL INFO Trees [0] 1/-1/-1->0->-1 [1] -1/-1/-1->0->1
node001:175945:177561 [0] NCCL INFO Channel 00 : 1[60] -> 0[60] [receive] via NET/Socket/0
node002:180379:182573 [0] NCCL INFO Channel 00 : 0[60] -> 1[60] [receive] via NET/Socket/0
node001:175945:177561 [0] NCCL INFO Channel 01 : 1[60] -> 0[60] [receive] via NET/Socket/0
node002:180379:182573 [0] NCCL INFO Channel 01 : 0[60] -> 1[60] [receive] via NET/Socket/0
node001:175945:177561 [0] NCCL INFO Channel 00 : 0[60] -> 1[60] [send] via NET/Socket/0
node002:180379:182573 [0] NCCL INFO Channel 00 : 1[60] -> 0[60] [send] via NET/Socket/0
node001:175945:177561 [0] NCCL INFO Channel 01 : 0[60] -> 1[60] [send] via NET/Socket/0
node002:180379:182573 [0] NCCL INFO Channel 01 : 1[60] -> 0[60] [send] via NET/Socket/0
node001:175945:177561 [0] NCCL INFO Connected all rings
node002:180379:182573 [0] NCCL INFO Connected all rings
node001:175945:177561 [0] NCCL INFO Connected all trees
node001:175945:177561 [0] NCCL INFO threadThresholds 8/8/64 | 16/8/64 | 8/8/512
node001:175945:177561 [0] NCCL INFO 2 coll channels, 2 p2p channels, 1 p2p channels per peer
node002:180379:182573 [0] NCCL INFO Connected all trees
node002:180379:182573 [0] NCCL INFO threadThresholds 8/8/64 | 16/8/64 | 8/8/512
node002:180379:182573 [0] NCCL INFO 2 coll channels, 2 p2p channels, 1 p2p channels per peer
node001:175945:177561 [0] NCCL INFO comm 0x1551f0001000 rank 0 nranks 2 cudaDev 0 busId 60 - Init COMPLETE
#
# out-of-place in-place
# size count type redop time algbw busbw error time algbw busbw error
# (B) (elements) (us) (GB/s) (GB/s) (us) (GB/s) (GB/s)
node001:175945:175945 [0] NCCL INFO Launch mode Parallel
node002:180379:182573 [0] NCCL INFO comm 0x1551f8001000 rank 1 nranks 2 cudaDev 0 busId 60 - Init COMPLETE
1048576 262144 float sum 1491.5 0.70 0.70 0e+00 1421.3 0.74 0.74 0e+00
2097152 524288 float sum 3077.5 0.68 0.68 0e+00 2568.8 0.82 0.82 0e+00
4194304 1048576 float sum 4617.3 0.91 0.91 0e+00 4622.5 0.91 0.91 0e+00
8388608 2097152 float sum 9483.1 0.88 0.88 0e+00 8911.9 0.94 0.94 0e+00
16777216 4194304 float sum 17516 0.96 0.96 0e+00 18613 0.90 0.90 0e+00
33554432 8388608 float sum 34799 0.96 0.96 0e+00 41837 0.80 0.80 0e+00
67108864 16777216 float sum 99790 0.67 0.67 0e+00 83126 0.81 0.81 0e+00
134217728 33554432 float sum 204614 0.66 0.66 0e+00 199530 0.67 0.67 0e+00
268435456 67108864 float sum 319701 0.84 0.84 0e+00 341630 0.79 0.79 0e+00
536870912 134217728 float sum 608809 0.88 0.88 0e+00 683016 0.79 0.79 0e+00
1073741824 268435456 float sum 1337187 0.80 0.80 0e+00 1247369 0.86 0.86 0e+00
2147483648 536870912 float sum 2638741 0.81 0.81 0e+00 2743454 0.78 0.78 0e+00
4294967296 1073741824 float sum 5996381 0.72 0.72 0e+00 5430549 0.79 0.79 0e+00
# Out of bounds values : 0 OK
# Avg bus bandwidth : 0.810575
#

The test demonstrates the usage of PMIX, MPI, and GPU in Enroot containers on multiple nodes. In the preceding example, 2 nodes with 1 GPU on each is requested by the job. For better results the cluster administrator can tune the test parameters.

It should be noted that the image is quite large, and requires enough free space under /var. Also, the transfer timeout (ENROOT_TRANSFER_TIMEOUT) in enroot.conf must be large enough to download such a large container image to the compute nodes. A value of at least 600 seconds is recommended.

If there are issues when executing MPI jobs with PMIX, then to help debug the issues the Pyxis documentation (https://github.com/NVIDIA/pyxis/wiki/Setup) suggests setting up the following environment variables:

  • PMIX_MCA_ptl=^usock

  • PMIX_MCA_psec=none

  • PMIX_SYSTEM_TMPDIR=/var/empty

  • PMIX_MCA_gds=hash (as configured here)

This configuration change is typically carried out in the software image of the regular nodes. For example, for a node category called default:

[root@basecm11 ~]# category=default
[root@basecm11 ~]# cat <<EOF >> /cm/images/${category}/etc/default/slurmd
PMIX_MCA_ptl=^usock
PMIX_MCA_psec=none
PMIX_SYSTEM_TMPDIR=/var/empty
PMIX_MCA_gds=hash
EOF
[root@basecm11 ~]# systemctl restart slurmd
[root@basecm11 ~]# cmsh -c "device; imageupdate -c ${category} -w"

7.3.4 Prolog And Epilog Scripts

7.3.4.1 What Prolog And Epilog Scripts Do

The workload manager runs prolog scripts before job execution, and epilog scripts after job execution. The purpose of these scripts can include:

  • checking if a node is ready before submitting a job execution that may use it

  • preparing a node in some way to handle the job execution

  • cleaning up resources after job execution has ended.

The administrator can run custom prolog or epilog scripts for the queues from CMDaemon for LSF, by setting such scripts in the Base View or cmsh front ends.

Example

[basecm11->wlm[lsf]->jobqueue]% use normal
[basecm11->wlm[lsf]->jobqueue[normal]]% show | grep -i epilog
Prolog/Epilog user root
Epilog
Host epilog /cm/local/apps/cmd/scripts/epilog

For Slurm, there are global prolog and epilog scripts, but editing them is not recommended. Indeed, in order to discourage editing them, the scripts cannot be set using the cluster manager front ends. Instead the scripts must be placed by the administrator in the software image, and the relevant nodes updated from the image.

7.3.4.2 Detailed Workings Of Prolog And Epilog Scripts

Even though it is not recommended, some administrators may nonetheless wish to link and edit the scripts directly for their own needs, outside of the Base View or cmsh front ends. A more detailed explanation of how the prolog scripts work therefore follows:

When a workload manager is configured using cm-wlm-setup or using the Base View setup wizard, then the workload manager is configured to run the generic prolog located in /cm/local/apps/cmd/scripts/prolog, and the generic epilog located in /cm/local/apps/cmd/scripts/epilog. The generic prolog and epilog scripts call a sequence of scripts for a particular workload manager in special directories. The directories have paths in the format:

  1. /cm/local/apps/ <workload manager>/var/prologs/

  2. /cm/local/apps/ <workload manager>/var/epilogs/

In these directories, scripts are stored with names that have suffixes and prefixes associated with them that make them run in special ways, as follows:

  • suffixes used in the prolog/epilog directory:

    • -prejob script runs prior to all jobs
  • prefixes used in the prolog/epilog directory:

    • 00- to

    • 99-

    Number prefixes determine the order of script execution, with scripts with a lower number running earlier.

The script names can therefore look like:

Example

  • 01-prolog-prejob

  • 10-prolog-prejob

Return values for the prolog/epilog scripts have these meanings:

  • 0: the next script in the directory is run.

  • A non-zero return value: no further scripts are executed from the prolog/epilog directory.

Often, the script in a prolog/epilog directory is not a real script but a symlink, with the symlink going to a real file located in a different directory. The general script is then able to take care of what is expected of the symlink. The name of the symlink, and destination file, usually hints at what the script is expected to do.

For example, if any health checks are marked to run as prejob checks during cm-wlm-setup configuration, then Slurm uses the symlink 01-prolog-prejob within the prolog directory /cm/local/apps/ <workload manager>/var/prologs/. The symlink links to the script /cm/local/apps/cmd/scripts/prolog-prejob. In this case, the script is expected to run prior to the job.

Example

[root@basecm11 apps]# pwd
/cm/local/apps
[root@basecm11 apps]# ls -l *slurm*/var/prologs/
slurm/var/prologs/:
total 0
lrwxrwxrwx 1 root root ... 01-prolog-prejob -> /cm/local/apps/cmd/scripts/prolog-prejob

Epilog scripts (which run after a job run) have the location /cm/local/apps/ <workload manager>/var/epilogs/. Epilog script names follow the same execution sequence pattern as prolog script names.

It should be noted that the 01-prolog-prejob symlink is created and removed by BCM on each compute node where prejob is enabled in the workload manager entity. Each such entity provides a Enable Prejob parameter that affects the symlink existence:

Example

[head->wlm[slurm]]% get enableprejob
yes
[head->wlm[slurm]]%

This parameter is set to yes by cm-wlm-setup when at least one health check is selected as a prejob one. If any healthcheck was configured as a prejob check before cm-wlm-setup execution, and the administrator had a checkmark for that health check, then the prejob is considered enabled.

7.3.4.3 Workload Manager Configuration For Prolog And Epilog Scripts

BCM configures generic prologs and epilogs during workload manager setup with cm-wlm-setup. The administrator can configure prologs and epilogs using appropriate parameters in the configuration of the workload managers, by creating the symlinks in the local prologs and epilogs directories.

Generic prologs and epilogs are configured by default to run on job compute nodes (one run per each node per job) for Slurm and LSF.

The following parameters for prologs and epilogs can be configured with cmsh or Base View:

  • Slurm

    • Prolog Slurmctld: the fully qualified path of a program to execute before granting a new job allocation. The program is executed on the same node where the slurmserver role is assigned. The parth corresponds to the PrologSlurmctld parameter in slurm.conf.

    • Epilog Slurmctld: the fully qualified path of a program to execute upon termination of a job allocation. The program is executed on the same node where the slurmserver role is assigned. Corresponds with the EpilogSlurmctld parameter in slurm.conf.

    • Prolog: the fully qualified path of a program to execute on job compute nodes before granting a new job or step allocation. The program corresponds to the Prolog parameter, and by default points to the generic prolog. This prolog runs on every node of the job if the Prolog flags parameter contains the flag Alloc (the default value), otherwise it is executed only on the first node of the job.

    • Epilog: the fully qualified path of a program to execute on job compute nodes when the job allocation is released.

  • LSF

    • Prolog: the fully qualified path of a program to execute on the LSF server node on job allocation. As an LSF queue parameter, it corresponds to the PRE_EXEC parameter in lsb.queues.

    • Epilog: the fully qualified path of a program to execute on the LSF server node on job allocation release. As an LSF queue parameter, it corresponds to the POST_EXEC parameter in lsb.queues

    • Host prolog: the fully qualified path of a program to execute on each node of a job before the job is started. Corresponds to the HOST_PRE_EXEC parameter in lsb.queues. By default it is configured to run the generic prolog

    • Host epilog: the fully qualified path of a program to execute on each node of a job after the job is finished. Corresponds to the HOST_POST_EXEC parameter in lsb.queues. By default it is configured to run the generic epilog.

7.4 Enabling, Disabling, And Monitoring Workload Managers

7.4.0.1 Enabling And Disabling A WLM

A WLM can be disabled for all nodes with cm-wlm-setup. Disabling the WLM means the workload management services are stopped by removing roles, and removing the WLM cluster object.

Alternatively, a WLM can be enabled or disabled by the administrator using role addition and role removal with Base View or cmsh. This is described further on in this section.

Multiple WLM instances of the same type: Versions of NVIDIA Base Command Manager prior to 9.0 already had the ability to have different workload managers run at the same time. However, NVIDIA Base Command Manager version 9.0 introduced the additional ability to run many workload managers of the same kind at the same time.

Example

Two WLM instances, Slurm and LSF, are already running at the same time in the cluster, with each WLM assigned to one category. Then, BCM can start up a third WLM instance, such as another Slurm WLM instance. These WLM instances are alternatively called WLM clusters, because they effectively allow one cluster to function as many separate clusters as far as running WLMs is concerned.

From the Base View or cmsh point of view a WLM consists of

  • a WLM server, usually on the head node

  • WLM clients, usually on the compute nodes

For the administrator, enabling or disabling the servers or clients is then simply a matter of assigning or unassigning a particular WLM server or client role on the head or compute nodes, as deemed appropriate.

The administrator typically also sets up an appropriate WLM environment module (slurm, lsf), so that it is loaded up for the end user (section 2.2.3).

7.4.1 Enabling And Disabling A WLM With Base View

A particular WLM package may be installed, but the WLM may not be enabled. This can happen, for example, if disabling a WLM that was previously enabled.

If a WLM instance exists, then the WLM client, submission, and server roles can be enabled or disabled from Base View by assigning or removing the appropriate roles to nodes, categories, or configuration overlays. Within the role, the properties of the WLM may be further configured by setting options.

7.4.1.1 Workload Manager Role Assignment To An Individual Node With Base View

Workload Manager Server The following roles are WLM roles that can be assigned to a node:

  • server

  • submit

  • accounting (for the Slurm WLM only, to configure and run the slurmdbd service)

  • client

Typically these roles are assigned using configuration overlays.

For example, if the default Slurm configuration is carried out with cm-wlm-setup, then the Slurm server role is assigned to the head node, basecm11, which can be viewed using the navigation path:

Devices > All Devices > Head Node > Settings > Roles > slurmserver

Workload management role assignment on a head node

Figure 7.16: Workload management role assignment on a head node

Overriding the configuration overlay assignment is possible, at node or category level. For example at node level the role can be defined by assignment at node level, using the navigation path:

Devices > All Devices > Head Node > Settings > Roles > +Add > SlurmServerRole

This allows parameters to be changed within the role. For example, for the SlurmServerRole the Slurmctld start policy can then be modified at node level.

Workload manager options that are not regarded as server role options can be found under the workload manager object. For Slurm this is in the navigation path:

HPC > Workload Management Clusters

For example, for a Slurm instance in the Workload Management Clusters pane, a builtin or backfill option can be set for the Scheduler parameter (figure 7.17).

Workload management role assignment options on a head node

Figure 7.17: Workload management role assignment options on a head node

To have the server start up on non-head nodes (but not for a head node), the imageupdate command (section 5.6.2) can be run. The workload manager server process and any associated schedulers then automatically start up.

Workload Manager Client Similarly, the workload manager client process can be enabled on a node or head node by having the workload manager client role assigned to it at a node level. Some basic options can be set for the client role.

Saving the role, and then running imageupdate (section 5.6.2), automatically starts up the client process with the options chosen, and managed by CMDaemon.

7.4.1.2 Workload Manager Role Assignment To A Category With Base View

It is true that workload manager role assignment can be done as described in the preceding text for individual non-head nodes. However it is usually more efficient to assign roles using categories or configuration overlays, due to the large number of compute nodes in typical clusters.

For example, the case can be considered of all physical on-premises non-head nodes. By default these are in the default category. This means that, by default, roles in the category are automatically assigned to all those non-head nodes, unless, as an exception, an individual node configuration overrides the category setting and uses a role setting instead at node level.

The workload manager roles for the category default can be viewed by using the navigation path: Grouping > Categories[default] > Settings > Roles

If the role has been assigned at category level, then clicking through to the subpane for a role allows role options to be edited and saved.

However,the default configuration using cm-wlm-setup assigns the role at configuration overlay level, which means that the role options (role settings) can

  • either be configured using the navigation path from the configuration overlay level:

    Grouping > Configuration Overlays[configuration overlay role] > Settings > Roles > role under configuration overlay role > Role settings

  • or they can be configured by adding a role at category level (or node level), with the +Add option. For example, for category level using the default category:

    Grouping > Categories[default] > Settings > Roles > + Add >category-level role

For compute nodes, the role assigned is usually a workload manager client. If the assigned role is that of a workload manager client, then the node with that role can have queues, GPUs, and other parameters specified for it.

For example, queues can then be assigned using the navigation path:
HPC > WLM Management Clusters[Slurm instance ] > Job Queues while GPUs, if using Slurm as the workload manager with default settings, with a default cm-wlm-setup installation, have a configuration overlay slurm-client-gpu that is specified using the navigation path:

Grouping > Configuration Overlays > slurm-client-gpu > Settings > roles > slurmclient > Generic Resources > gpu

The workload manager server role can also be assigned to a non-head node. For example, a Slurm server role can be taken on by a non-head node. This is the equivalent to the --server-nodes option of cm-wlm-setup.

Saving the roles with their options and then running imageupdate (section 5.6.2) automatically starts up the newly-configured workload manager.

7.4.1.3 Workload Manager Role Options With Base View

Each workload manager client role (sometimes loosely called a compute node role) has options that can be set for GPUs, Queues, and Slots. Generally, the value that is set for Slots is the number of jobs expected to run on a node simultaneously. This number can, for example, be set to the number of threads. Threads (virtual cores) in the x86_64 architecture are provided by Intel’s hyper-threading (HT), or by AMD’s simultaneous multithreading (SMT).

The physical CPU, the cores on the CPU, and the threads of a core (HT, SMT) should not be confused with each other. They are distinct concepts, and can all have different values.

  • Slots, in a workload manager, corresponds in BCM to:

    • the CPUs setting (a NodeName parameter) in Slurm’s slurm.conf

    • the -n flag, or the total number of processor slots requested, in IBM Spectrum LSF

    • the nproc (or ncpus) setting in PBS,

    In LSF setting the number of slots for the client role to 0 means that the client node does not run jobs on itself, but becomes a submit host, which means it is able to forward jobs to other client nodes.

    The default value for Slots is AUTO, which means that the value for Slots is auto-detected. The parameter may be alternatively be set to a non-negative number. Each WLM has a different implementation on how this is done. For instance, for Slurm, BCM uses Slurm’s own auto-detection implementation.

  • Queues with a specified name are available in their associated role after they are created. The creation of queues is described in sections 7.6.2 (using Base View) and 7.7.3 (using cmsh).

All server roles also provide the option to enable or disable the External Server setting. Enabling that means that the server is no longer managed by BCM, but provided by an external device.

The cmsh equivalent of enabling an external server is described here.

7.4.2 Enabling And Disabling A Workload Manager With cmsh

A particular workload manager package may be set up, but not enabled. This can happen, for example, if no WLM server or WLM client role has been assigned.

If a WLM instance exists, then the WLM client, server, or submit roles can be enabled from cmsh by assigning it from within the roles submode. Within the assigned role, the properties of the WLM may be further configured by setting options.

7.4.2.1 Workload Manager Role Assignment To A Configuration Overlay With cmsh

In cmsh, workload manager role assignment to a configuration overlay (section 2.1.5) can be done using configurationoverlay mode. By default cm-wlm-setup run as a TUI session creates some configuration overlays with suggestive names, and assigns roles to the configuration overlays according to what the names suggest. Thus, for example, with the cm-wlm-setup TUI session used to carry out an express setup for Slurm, the configuration overlays that get created are the following:

Example

[basecm11->configurationoverlay]% list
Name (key) Priority All head nodes Nodes Categories Roles
-------------------- ---------- -------------- ---------------- ---------------- ----------------
slurm-accounting 500 yes slurmaccounting
slurm-client 500 no default slurmclient
slurm-server 500 yes slurmserver
slurm-submit 500 no default slurmsubmit
wlm-headnode-submit 600 yes slurmsubmit

Nodes in the default category can take on the slurmclient or slurmsubmit role by setting the nodes for the role using the associated configuration overlays slurm-client or slurm-submit.

The wlm-headnode-submit configuration overlay is a special overlay. It is applied only to the head node, and is shared among all installed workload managers. Setting this overlay means that the head node, by default, has a submit role for a given workload manager.

Example

[basecm11->configurationoverlay]% use slurm-client
[basecm11->configurationoverlay[slurm-client]]% show
Parameter Value
-------------------------------- ------------------------------------------------
Name slurm-client
Revision
All head nodes no
Priority 500
Nodes
Categories default
Roles slurmclient
Customizations <0 in submode>
[basecm11->configurationoverlay[slurm-client]]% set nodes
node001 node002 node003 basecm11
[basecm11->configurationoverlay[slurm-client]]% set nodes node001..node002
[basecm11->configurationoverlay*[slurm-client*]]% commit
[basecm11->configurationoverlay[slurm-client]]% list
Name (key) Priority All head nodes Nodes Categories Roles
-------------------- ---------- -------------- ---------------- ---------------- ----------------
slurm-accounting 500 yes slurmaccounting
slurm-client 500 no node001,node002 default slurmclient
slurm-server 500 yes slurmserver
slurm-submit 500 no default slurmsubmit
wlm-headnode-submit 600 yes slurmsubmit
[basecm11->configurationoverlay[slurm-client]]%

All the head nodes can also be made to take on the configuration overlay role by setting its All head nodes value to yes. The union set of All head nodes with Nodes is the set of nodes to which the role is applied for that configuration overlay.

Values for the parameters in a role, such as the slurmclient role, can be set within the configuration overlay:

Example

[basecm11->configurationoverlay[slurm-client]]% roles
[basecm11->configurationoverlay[slurm-client]->roles]% use slurmclient
[basecm11->configurationoverlay[slurm-client]->roles[slurmclient]]% show
Parameter Value
---------------------------------- -------------------------------------
Name slurmclient
Revision
Type SlurmClientRole
Add services yes
WLM cluster slurm
Slots 0
All queues no
Queues defq
Features
Sockets 0
Cores per socket 0
Threads per core 0
Boards 0
Sockets per board 0
Real memory 0B
Node address
Weight 0
Port 0
Tmp disk 0
Reason
CPU spec list
Core spec count 0
Mem spec limit 0B
GPU auto detect BCM
Node customizations <0 in submode>
Generic resources <0 in submode>
Cpu bindings None
Slurm hardware probe auto detect yes
Memory autodetection slack 10.0%
IMEX no
Write procs always no
Write only Procs no
Add to topology yes
Nodesets
Power profiles <submode>
Nodeset features
[basecm11->configurationoverlay[slurm-client]->roles[slurmclient]]%

After the workload manager roles are assigned or unassigned, and after running imageupdate (section 5.6.2) for non-head nodes, the associated workload manager services automatically start up or stop as appropriate.

The configuration overlay role values are inherited by categories and nodes, unless the categories and nodes have their own values set. Thus, for role properties, a value set at node level overrides values set at category level, and a value set at configuration overlay level overrides a value set at category level. This is typical of how properties of objects are inherited in BCM levels.

7.4.2.2 Workload Manager Role Assignment To A Category With cmsh

In cmsh, workload manager role assignment to a node category can be done using category mode, using the category name, assigning a role from the roles submode, setting the WLM instance for that role, and committing the modified role:

Example

[root@basecm11 ~]# cmsh
[basecm11]% category
[basecm11->category]% use default
[basecm11->category[default]]% roles
[basecm11->category[default]->roles]% assign slurmclient
[basecm11->category[default]->roles*[slurmclient*]]% wlm list
Type Name (key) Server nodes Submit nodes Client nodes
------- --------------------- ------------ ---------------- ----------------
slurm slurm1 basecm11 basecm11,node001 node001,node002
[basecm11->category[default]->roles*[slurmclient*]]% set wlmcluster slurm1
[basecm11->category[default]->roles*[slurmclient*]]% commit

Settings that are assigned in the slurmclient role of the category overrule the slurmclient role configuration overlay settings.

The role assignment at category level requires the value for a WLM instance to be specified for wlmcluster before the commit command is successful.

7.4.2.3 Workload Manager Role Assignment To An Individual Node With cmsh

In cmsh, assigning a workload manager role to a head node can be done in device mode. This can be done by using the head node name as the device, assigning the workload manager role to the device, setting the WLM instance value to the role within the role submode, and committing the modified role.

Example

[root@basecm11 ~]# cmsh
[basecm11]% device
[basecm11->device]% use basecm11
[basecm11->device[basecm11]]% roles
[basecm11->device[basecm11]->roles]% assign slurmserver
[basecm11->category[default]->roles*[slurmserver*]]% wlm list
Type Name (key) Server nodes Submit nodes Client nodes
------- --------------------- ------------ ---------------- ----------------
slurm slurm1 basecm11 basecm11,node001 node001,node002
[basecm11->category[default]->roles*[slurmserver*]]% set wlmcluster slurm1
[basecm11->device*[basecm11*]->roles*[slurmserver*]]% commit
[basecm11->device[basecm11]->roles[slurmserver]]%

For regular nodes, role assignment is done using device mode, using the node name. Th node name is assigned the workload manager role, the WLM instance value is set for that role in the role submode, and the modified role is committed.

Example

[root@basecm11 ~]# cmsh
[basecm11]% device
[basecm11->device]% use node001
[basecm11->device[node001]]% roles
[basecm11->device[node001]->roles]% assign slurmclient
[basecm11->device[node001]->roles*[slurmclient*]]% wlm list
Type Name (key) Server nodes Submit nodes Client nodes
------- --------------------- ------------ ---------------- ----------------
slurm slurm1 basecm11 basecm11,node001 node001,node002
[basecm11->device[node001]->roles*[slurmclient*]]% set wlmcluster slurm1
[basecm11->device[node001]->roles*[slurmclient*]]% commit
[basecm11->device[node001]->roles[slurmclient]]%

The role assignment at node level requires the value for a WLM instance to be specified for wlmcluster before the commit command is successful.

Role assignment values set in device mode have precedence over any role assignment values set in category mode for that node. This means, for example, that if a node is originally in a node category with a slurmclient role and queues set, then when the node is assigned a slurmclient role from device mode, its queue properties are empty by default.

7.4.2.4 Setting Options For Workload Manager Settings With cmsh

In the preceding text, it is explained how the workload manager client or server is assigned a role (such as slurmclient or slurmserver) within the roles submode. It is done from within a main mode of cmsh. The main modes from which role assignment can be done are: configurationoverlay, category or device.

Options for workload managers in general: Whatever main mode is used, the workload manager options for a role can then be set with the usual object commands introduced in section 2.5.3.

  • WLM client options: For example, the configuration options of a WLM client, such as the Slurm client, can be seen by using the show command for the role.

    Here it can be seen in the slurmclient role, provided by the default configuration overlay slurm-client:

    Example

    [basecm11->configurationoverlay[slurm-client]->roles[slurmclient]]% show
    Parameter Value
    ---------------------------------- ------------------------------------------------
    Name slurmclient
    Revision
    Type SlurmClientRole
    Add services yes
    WLM cluster slurm
    Slots 0
    All queues no
    Queues defq
    Features
    Sockets 0
    Cores per socket 0
    Threads per core 0
    Boards 0
    Sockets per board 0
    Real memory 0B
    Node address
    Weight 0
    Port 0
    Tmp disk 0
    Reason
    CPU spec list
    Core spec count 0
    Mem spec limit 0B
    GPU auto detect BCM
    Node customizations <0 in submode>
    Generic resources <0 in submode>
    Cpu bindings None
    Slurm hardware probe auto detect yes
    Memory autodetection slack 10.0%
    IMEX no
    Write procs always no
    Write only Procs no
    Add to topology yes
    Nodesets
    Power profiles <submode>
    Nodeset features

    The Slots option can be set in the role

    Example

    [basecm11->configurationoverlay[slurm-client]->roles[slurmclient]]% set slots 2
    [basecm11->configurationoverlay*[slurm-client*]->roles*[slurmclient*]]% commit
    [basecm11->configurationoverlay[slurm-client]->roles[slurmclient]]%
  • WLM server options: Similarly, WLM server options can be managed from an assigned server role. For Slurm, the slurmserver role for a device shows:

    Example

    [basecm11->configurationoverlay[slurm-server]->roles[slurmserver]]% show
    Parameter Value
    -------------------------------- ------------------------------------------------
    Name slurmserver
    Revision
    Type SlurmServerRole
    Add services yes
    WLM cluster slurm
    External server no
    Slurmctld start policy ALWAYS

Option to set an external workload manager: A workload manager can be set to run as an external server from its slurmserver role, within a configuration overlay or within device mode :

Example

[basecm11->device[basecm11]->roles[slurmserver]]% set externalserver on
[basecm11->device[basecm11]->roles[slurmserver*]]% commit

For convenience, setting the external server on the head node is recommended.

The Base View equivalent of configuring externalserver is described here.

7.4.3 Monitoring The State Of Workload Manager Services

By default, the workload manager services are monitored. BCM attempts to restart the services using the service tools (section 3.15), unless the role for that workload manager service is disabled, or the service has been stopped.

Workload manager roles and corresponding services can be disabled using cm-wlm-setup (section 7.3), Base View role configuration (section 7.4.1), or cmsh role configuration (section 7.4.2).

The daemon service states can be viewed for each node using the shell, cmsh, or Base View (section 3.15).

Queue submission and scheduling daemons normally run on the head node.

7.4.3.1 Viewing Services In Base View

From Base View services are viewable using the navigation path to the services running on the node. For example, on a head node basecm11, the navigation path:

Devices > All Devices > basecm11 > Settings > Services

leads to a display similar to figure 7.18:

Services seen on head node in Base View

Figure 7.18: Services seen on head node in Base View

For a regular node, a similar navigation path for node001, for example, is:

Devices > All Devices > node001 > Settings > Services

and leads to a display similar to figure 7.19:

Services seen on regular node in Base View

Figure 7.19: Services seen on regular node in Base View

7.4.3.2 Viewing Roles In Base View

Services are often set with BCM roles (section 2.1.5). The navigation path:
Devices > All Devices > basecm11 > Settings > Roles
shows the list of roles. Figure 7.20 shows some of the Slurm roles that result in Slurm services running on the head node:

Roles seen on head node in Base View

Figure 7.20: Roles seen on head node in Base View

Similarly, the navigation path:
Devices > All Devices > node001 > Settings > Roles
shows the list of roles for a regular node. Figure 7.21 shows some of the Slurm roles that result in Slurm services running on the regular nodes:

Roles seen on regular node in Base View

Figure 7.21: Roles seen on regular node in Base View

The roles seen in these figures are from the defaults that cm-wlm-setup provides in an express setup.

For regular nodes, the inheritance of roles from category level or configuration overlay level is indicated by the values in the parentheses alongside the role name. Thus, in figure 7.21, the slurmsubmit and slurmclient roles are decided by the default setting from the configuration overlay.

The assignment of roles can be varied to taste for WLMs. This allows WLM services to run on the head node or on the regular nodes.

7.4.3.3 Viewing Services And Roles In cmsh

From cmsh the services states are viewable from within device mode, using the services command. One-liners from the shell to illustrate this are (output elided):

Example

[root@basecm11 ~]# cmsh -c "device services node001; status"
Service Status
------------ -----------
...
munge [ UP ]
named [ UP ]
nslcd [ UP ]
...
slurmd [ UP ]
[root@basecm11 ~]# cmsh -c "device services basecm11; status"
Service Status
------------ -----------
...
munge [ UP ]
...
slurmctld [ UP ]
slurmdbd [ UP ]

Roles can be viewed from within the main modes of configurationoverlay, category, or device. One-liners to view these are:

Example

[root@basecm11 ~]# cmsh -c "configurationoverlay; list"
Name (key) Priority All head nodes Nodes Categories Roles
-------------------- ---------- -------------- ---------------- ---------------- ----------------
slurm-client 500 no default slurmclient
slurm-server 500 yes slurmserver
wlm-headnode-submit 600 yes slurmsubmit
[root@basecm11 ~]# cmsh -c "category; use default; roles; list -p"
Name (key)
----------------------------
[overlay:slurm-client:500] slurmclient
[root@basecm11 ~]# cmsh -c "device use node001; roles; list -p"
Name (key)
----------------------------------------
[overlay:slurm-client:500] slurmclient
[root@basecm11 ~]# cmsh -c "device use basecm11; roles; list -p"
Name (key)
----------------------------------------
[750] backup
[750] boot
[750] firewall
[750] headnode
[750] monitoring
[750] provisioning
[750] storage
[overlay:slurm-server:500] slurmserver

The -p|--priority option displays of the list command the priority setting for the roles.

7.5 Configuring And Running Individual Workload Managers

BCM deals with the various choices of workload managers in as generic a way as possible. This means that not all features of a particular workload manager can be controlled, so that fine-tuning must be done through the workload manager configuration files. Workload manager configuration files that are controlled by BCM should normally not be changed directly because BCM overwrites them. However, overwriting by CMDaemon is prevented on setting the directive:

FreezeChangesTo <workload manager>Config = <true|false>

in cmd.conf (Appendix C), where <workload manager> takes the value of Slurm or LSF, as appropriate. The value of the directive defaults to false.

A list of configuration files that are changed by CMDaemon, the items changed, and the events causing such a change are listed in Appendix H.

A very short guide to some specific workload manager commands that can be used outside of the NVIDIA Base Command Manager 11 system is given in Appendix F.

7.5.1 Configuring And Running Slurm

7.5.1.1 Slurm Packages

At the time of writing of this section (July 2026), BCM is integrated with Slurm packages for Slurm versions 25.05, 25.11, and 26.05. Slurm version 25.11 is installed by default.

For Slurm version 25.05, the following packages are available from the BCM repositories for Ubuntu 24.04:

  • slurm25.05: Simple Linux Utility for Resource Management, Slurm Workload Management.

  • slurm25.05-contribs: contributed utilities for Slurm

  • slurm25.05-devel: Development package for Slurm. Includes the header files and static libraries for the SLURM API.

  • slurm25.05-example-configs: Example configuration files for Slurm.

  • slurm25.05-libpmi: Slurm’s implementation of the pmi libraries.

  • slurm25.05-openlava: OpenLava/LSF wrappers for transition from OpenLava/LSF to Slurm.

  • slurm25.05-pam: PAM module for restricting access to compute nodes via Slurm.

  • slurm25.05-perlapi: Perl API to Slurm.

  • slurm25.05-prs: Slurm PRS plugin.

  • slurm25.05-sackd: Slurm authentication daemon. Used on login nodes that are not running slurmd daemons to allow authentication to the cluster.

  • slurm25.05-slurmctld: Slurm control daemon.

  • slurm25.05-slurmd: Slurm compute node daemon.

  • slurm25.05-slurmdbd: Slurm database daemon.

  • slurm25.05-slurmrestd: Slurm REST API translator.

  • slurm25.05-torque: Torque/PBS wrappers for transition from Torque/PBS to Slurm.

For Slurm version 25.11, the value of 25.05 is simply replaced by 25.11 in the preceding list of packages.

Similarly, for Slurm version 26.05, the value of 25.05 is simply replaced by 26.05 in the preceding list of packages.

The distribution version of Slurm (package: slurm) is not integrated with BCM and conflicts with the preceding packages. It should not be used.

From BCM 11.34, BCM Slurm packages include the acct_gather_energy/ipmi plugin alongside the existing energy plugins (gpu, ibmaem, pm_counters, and rapl). This allows administrators to set AcctGatherEnergyType=acct_gather_energy/ipmi in slurm.conf to collect per-node power and energy data from IPMI-based baseboard sensors for job accounting and efficiency reporting. Configuration details can be found in the SchedMD documentation at https://slurm.schedmd.com/slurm.conf.html#OPT_AcctGatherEnergyType.

Important updates from upstream are patched into the BCM repositories. If updating Slurm packages, all the Slurm packages should be updated to the same version, on the compute nodes as well as on the scheduling node.

7.5.1.2 Building Custom Slurm Packages

The BCM Slurm packages can be rebuilt from source by the administrator, on the BCM cluster itself. Rebuilding allows important Slurm patches to be applied sooner than the standard BCM release cycle provides them, and allows the Slurm binaries to be optimized for a particular CPU or hardware configuration.

The build script, along with the RPM and DEB spec files that NVIDIA uses to build the packages, is shipped in a slurm<version>-builder package, for example slurm25.11-builder or slurm26.05-builder. Because the spec files are bundled in the package, no separate download of them is needed. The builder package is available from the BCM repositories, but is not installed by default. Installing it places the build script in /cm/local/apps/slurm/current/builder/, which is not in the standard $PATH.

Only Slurm version 25.11 and higher can be built with this script. The earlier Slurm version that BCM also ships, 25.05, cannot be built with it.

The script can be run on BCM clusters running RHEL 9, RHEL 10, Ubuntu 22.04, Ubuntu 24.04, or Ubuntu 26.04. SLES is not supported.

The script takes a required --version option, in X.Y.Z format:

[root@basecm11 ~]# cd /cm/local/apps/slurm/current/builder
[root@basecm11 builder]# ./create-packages.sh --version 25.11.5

The script downloads the Slurm source tarball and loads the modulefiles that are needed for the build. When the build finishes, the resulting packages are saved to /tmp/slurm<version>-<revision>-<release-tag>/, where <revision> is a build counter that increases with each run, and <release-tag> encodes the BCM version and a checksum of the source tarball.

Validating the build environment:

Adding the --validate option carries out a dry run that checks the prerequisites without building anything. Each check is reported as [PASS] or [FAIL], and the script exits with 0 if every check passed, or 1 if any check failed:

[root@basecm11 builder]# ./create-packages.sh --version 25.11.5 --validate
Slurm version: 25.11.5 [PASS]
Distribution [PASS]
Host tools [PASS]
Build tools [PASS]
Build dependencies [PASS]
Modules [PASS]
Disk space [PASS]
All checks passed.

The checks cover the Slurm version, the distribution and its major version, the host tools (wget, tar, and jq), the build tool (dpkg-buildpackage on Ubuntu, or rpmbuild on RHEL), the build dependencies, the availability of the required modules, and whether at least 100MB of disk space is free.

Building inside a software image:

Packages that are intended for a particular software image should be built inside that image, so that the build uses the same operating system, libraries, and modules that the image provides. The image should be cloned first, using cmsh or Base View, and the build then run inside the clone with cm-chroot:

[root@basecm11 ~]# cm-chroot /cm/images/slurm-builder \
/cm/local/apps/slurm/current/builder/create-packages.sh --version 25.11.5

The build dependencies are installed automatically, driven by a dependencies.yaml file that ships with the builder package, whether the script is run on the host or inside a cm-chroot image. No manual dependency installation is required beforehand.

Building from a different source tarball:

A source tarball other than the one that the script downloads from upstream can be used by passing its path with --archive:

[root@basecm11 builder]# ./create-packages.sh --version 25.11.5 \
--archive /root/slurm-25.11.5.tar.bz2

The contents of the tarball must be inside a directory that matches the version being built. So, for Slurm 25.11.5, the tarball contents must be inside a directory called slurm-25.11.5, in the same way as the upstream Slurm tarballs.

The packages that are built are installed in the same way as for a Slurm upgrade, except that the packages are taken from the local directory instead of from the package repositories.

7.5.1.3 Upgrading From Earlier Slurm Versions To slurm25.11

Upgrading between major versions of Slurm is generally possible. At the time of writing (December 2025) of this section, the upstream Slurm policy allows upgrades from three previous major release versions since version 24.11. Details on the upgrade compatibility can be seen at the SchedMD site at https://slurm.schedmd.com/upgrades.html#compatibility_window.

It is a good idea to upgrade one version at a time, rather than jumping too many versions ahead, which can require a full wipe of the Slurm configuration.

If Slurm is using Pyxis (section 7.3.3), then upgrading the Slurm version means that Pyxis needs to be reinstalled using cm-wlm-setup. The reinstallation run for Pyxis compiles Pyxis and recreates a plugin directory for the new Slurm version under /cm/local/apps/slurm/.

An upgrade from one major version of Slurm to another can be carried out according to the following example, which is for an update from major version 25.05 to version 25.11, and avoids total reconfiguration of the Slurm configuration:

  • It is recommended that no jobs are running. Draining nodes (section 7.7.4) is one way to arrange this over time. No new jobs run on a drained node, but old ones are allowed to finish.

  • When all running jobs are finished, then Slurm server services—slurmctld and slurmdbd—should be stopped using cmsh or Base View (section 3.15.2):

    Example

    [basecm11->device[basecm11]->services]% stop slurmctld
    ...Service slurmctld was stopped
    [basecm11->device[basecm11]->services]% stop slurmdbd
    ...Service slurmdbd was stopped
  • The old Slurm packages should then be removed. There can be only one version of Slurm at a time, so there will be a package installation conflict if a new version is installed while an old one is still there.

    Removal can be carried out on RHEL-based systems with, for example:

    [root@basecm11 ~]# yum remove slurm25.05*

    In Ubuntu the equivalent is carried out using apt remove slurm25.05*.

    The old packages must also be removed from each software image that uses it:

    Example

    [root@basecm11 ~]# cm-chroot-sw-img /cm/images/<software image>
    ...
    [root@<software image> /]# yum remove slurm25.05*
    ...removal takes place...
    [root@<software image> /]# exit

    The cm-chroot-sw-img wrapper utility is discussed in section 9.4.1.

  • The new packages can then be installed. For installation onto the RHEL head node, the installation might be carried out as follows:

    [root@basecm11 ~]# yum install slurm25.11 slurm25.11-contribs slurm25.11-devel \
    slurm25.11-libpmi slurm25.11-openlava slurm25.11-pam slurm25.11-perlapi \
    slurm25.11-prs slurm25.11-sackd slurm25.11-slurmctld slurm25.11-slurmd \
    slurm25.11-slurmdbd slurm25.11-slurmrestd slurm25.11-torque

    The same packages as on the head node are installed by default in the software image when installing with cm-wlm-setup in versions of Slurm from version 24 onward. The installation is carried out manually for the upgrade in each software image with:

    Example

    [root@basecm11 ~]# cm-chroot-sw-img /cm/images/<software image>
    ...
    [root@<software image> /]# yum install slurm25.11-slurmd slurm25.11-contribs slurm25.11-devel \
    slurm25.11-libpmi slurm25.11-openlava slurm25.11-pam slurm25.11-perlapi \
    slurm25.11-prs slurm25.11-sackd slurm25.11-slurmctld \
    slurm25.11-slurmdbd slurm25.11-slurmrestd slurm25.11-torque
    ...installation takes place
    [root@<software image> /]# exit
  • The new Slurm version is then set in cmsh or Base View, in the Slurm WLM cluster configuration:

    Example

    [root@basecm11 ~]# cmsh
    [basecm11]% wlm use slurm
    [basecm11->wlm[slurm]]% set version 25.11; commit
  • Slurm server services slurmctld and slurmdbd should then be started again using cmsh or Base View:

    Example

    [basecm11->device[basecm11]->services]% start slurmdbd
    [basecm11->device[basecm11]->services]% start slurmctld
  • The nodes can then have their new image placed on them, and the new Slurm configuration can then be taken up. This can be done in the following two ways:

    1. The regular nodes can then be restarted to supply the live nodes with the new image and get the new Slurm configuration running.

    2. Alternatively, the imageupdate command (section 5.6.2) can be run on the live nodes to supply them with the image.

      Running the imageupdate command in dry mode (the default) first is recommended. The synclog command can then be run to check there are no unexpected changes that will take place due to the update. If all is well, then imageupdate’s wet mode flag -w can be used in order to really carry out the task.

      For example, the change can be checked, and then actually carried out, for the image on node001 with:

      [root@basecm11 ~]# cmsh
      [basecm11]% device use node001
      [basecm11->device[node001]]% imageupdate
      Performing dry run (use synclog command to review result, then pass -w to perform real update)...
      ...some messages...
      imageupdate [ COMPLETED ]
      [basecm11->device[node001]]% synclog
      ...rsync dry run output...
      [basecm11->device[node001]]% imageupdate -w
      ...same messages as before, but this time it really happens...
      [basecm11->device[node001]]% commit

      The last commit command triggers the reconfiguration of the file /etc/systemd/system/slurmd.service.d/99-cmd.conf on the node. After a short time—around 30 seconds—the file is regenerated. The slurmd service on the node can then be restarted with:

      [root@basecm11 ~]# ssh node001 "systemctl daemon-reload"
      cmsh -c "device services node001; use slurmd; restart"

7.5.1.4 IMEX

NVIDIA IMEX (Internode Memory Exchange Service) is a secure service that facilitates the mapping of GPU memory over NVLink between the GPUs in an NVLIink domain.

The imexctl command in device mode lists the status and other properties of the nodes.

Example

[basecm11->device]% imexctl
Node IP Status Version Connection IP Status
------------------- ------------- -------- ----------- ----------------- ------------- ----------
dgx-gb200-c1 10.140.2.134 READY 570.172.08 dgx-gb200-m06-c1 10.140.2.134 CONNECTED
dgx-gb200-c1 10.140.2.134 READY 570.172.08 dgx-gb200-m06-c2 10.140.2.135 CONNECTED
dgx-gb200-c1-dpu0 0.0.0.0
dgx-gb200-c1-dpu1 0.0.0.0
dgx-gb200-c2 10.140.2.135 READY 570.172.08 dgx-gb200-m06-c1 10.140.2.134 CONNECTED
dgx-gb200-c2 10.140.2.135 READY 570.172.08 dgx-gb200-m06-c2 10.140.2.135 CONNECTED
basecm11 0.0.0.0 NONE
basecm11-k8s-01 0.0.0.0 NONE
basecm11-k8s-02 0.0.0.0 NONE
basecm11-k8s-03 0.0.0.0 NONE
basecm11-slogin-0 0.0.0.0 NONE
[basecm11->device]%

Pinning IMEX to a specific network (FQDN or IP in nodes_config.cfg):

By default, the autogenerated IMEX peer list in /etc/nvidia-imex/nodes_config.cfg uses the short hostname of each node. IMEX can instead be pinned to a particular network. When a network has the imex parameter enabled, the fully qualified domain name (FQDN) on that network is written to nodes_config.cfg for each peer. For example, for an IMEX network called imexnetwork:

[root@basecm11 ~]# cmsh
[basecm11]% network use imexnetwork
[basecm11->network[imexnetwork]]% set -e imex yes
[basecm11->network*[imexnetwork*]]% commit

The resulting config file uses the FQDN for each node:

root@node001:~# cat /etc/nvidia-imex/nodes_config.cfg
# This section of this file was automatically generated by cmd. Do not edit manually!
# BEGIN AUTOGENERATED SECTION -- DO NOT REMOVE
node001.eth.cluster
node002.eth.cluster
node003.eth.cluster
# END AUTOGENERATED SECTION -- DO NOT REMOVE

The peers can be written as IP addresses instead of FQDNs by also enabling the imex ip parameter on the same network:

[root@basecm11 ~]# cmsh
[basecm11]% network use imexnetwork
[basecm11->network[imexnetwork]]% set -e imex yes
[basecm11->network*[imexnetwork*]]% set -e "imex ip" yes
[basecm11->network*[imexnetwork*]]% commit

The resulting config file uses the IP address of each node on that network, with the node name retained as a comment:

root@node001:~# cat /etc/nvidia-imex/nodes_config.cfg
# This section of this file was automatically generated by cmd. Do not edit manually!
# BEGIN AUTOGENERATED SECTION -- DO NOT REMOVE
# node001
10.141.0.1
# node002
10.141.0.2
# node003
10.141.0.3
# END AUTOGENERATED SECTION -- DO NOT REMOVE

For Slurm, BCM can enable the IMEX daemon either globally, or per job. Enabling the IMEX daemon globally for Slurm:

If IMEX is set globally, then it means that it is set to run on all nodes at runtime.

The advantage of this configuration is that it is easy to set up, and easy to test to see if it is all working.

A disadvantage is that a user running a job on one node can read memory from a job run by another user on another node. It requires overcoming difficult hurdles to carry out, but it is not impossible. The administrator should therefore weigh up if this seems a significant issue for the cluster being administered.

The IMEX global service can be run by setting the values for the service for the compute nodes. For example, nodes in a dgx-gb200 category can have the service added and set to:

[basecm11->category[dgx-gb200]->services[nvidia-imex]]% show
Parameter Value
-------------------------------- ------------------------------------------------
Revision
Service nvidia-imex
Run if always
Monitored yes
Autostart yes
Managed yes

Per-rack IMEX configuration can be forcibly created, regardless of domains and partitions, with:

[basecm11->category[dgx-gb200]->services[nvidia-imex]]% set -e rack yes

Enabling and disabling the IMEX daemon per job for Slurm:

Configuring per job means that IMEX runs just before the job starts, and that the service runs only on a node that needs it for the job.

A disadvantage is that verifying that it actually works requires a job run.

Running the IMEX daemon per job has the advantage that one user running a job cannot read the memory of a job run by another user on another node.

To run IMEX per job, any global IMEX setting must first be cleared away. This can be done by first:

  • removing the nvidia-imex service configuration entirely from CMDaemon

    Example

    [basecm11->category[dgx-gb200]->services[nvidia-imex]]% remove nvidia-imex; commit
  • stopping the service on the compute nodes, for example with pdssh or pdexec, or simply carrying out a reboot

The value of imex in the slurmclient role can then be set:

[root@basecm11 ~]# cmsh
[basecm11]% configurationoverlay roles slurm-client-gpu
[basecm11->configurationoverlay[slurm-client-gpu]->roles]% use slurmclient
[basecm11->configurationoverlay[slurm-client-gpu]->roles[slurmclient]]% set imex yes
[basecm11->configurationoverlay*[slurm-client-gpu*]->roles*[slurmclient*]]% commit
[basecm11->configurationoverlay[slurm-client-gpu]->roles[slurmclient]]%

Committing that imex setting configures Slurm prolog and epilog scripts in the backend as follows:

  • the prolog script configures the IMEX daemon with the nodes allocated to the GPU job and starts the IMEX daemon on the node

  • the epilog cleans up the configuration and stops the IMEX daemon on the node

The TCP port used by IMEX for peer communication is defined by SERVER_PORT in /etc/nvidia-imex/config.cfg.

For running IMEX per job, the port in the file is written in as a random port for that job, in the allowed range of 0 to 65535.

To use an IMEX that is not managed by BCM, the SERVER_PORT value needs to be changed manually for all nodes to suit that other IMEX. This can be done with the help of the pdcp command, which comes with the pdsh package (section 14.1). The pdcp command can copy the config.cfg file from the BCM software image to all nodes that no longer use BCM to run IMEX per job.

7.5.1.5 Workload Power Profile Settings

NVIDIA Blackwell GPUs support workload power profile settings (WPPS). The NVIDIA Mission Control System Administration Guide has more background information on WPPS at:

https://docs.nvidia.com/mission-control/docs/systems-administration-guide/2.0.0/wpps/introduction.html

For WPPS to work as expected, a node that has a job allocated to it must have the job allocated exclusively to it, and oversubscribe (here) should not be set.

Each GPU in a job can have a specific workload power profile set for it. The profile can vary per GPU and per user. The gpuworkloadpowerprofiles command (here) can be used to configure the GPU workload power profiles.

BCM allows the user who is running a Slurm job to change the job power profiles in two ways:

  1. Statically: the job prolog script switches the power profiles for all GPUs allocated to the job just before the job starts. That is, the power profile is managed at job submission time.

  2. Dynamically: the job process sets power profiles for each allocated GPU during job execution. That is, the power profile is managed during the job runtime.

In both cases, when the job is finished, the epilog script resets the GPU power profiles back to the default.

Workload power profiles settings are a part of the slurmclient role, located within the Power profiles submode. They can be reached from within the configuration overlay, category, or node level:

Example

[root@basecm11 ~]# cmsh
[basecm11]% configurationoverlay roles slurm-client-gpu
[basecm11->configurationoverlay[slurm-client-gpu]->roles]% use slurmclient
[basecm11->configurationoverlay[slurm-client-gpu]->roles[slurmclient]]% powerprofiles
[basecm11->configurationoverlay[slurm-client-gpu]->roles[slurmclient]->powerprofiles]% show
Parameter Value
-------------------------------- ------------------------------------------------
Disabled yes
Fail on error no
Job keyword wpps
Jobs profiles directory /var/run/nvidia/workload-power-profiles
Debug no
Debug log directory /var/spool/cmd/wlm/wpps
[basecm11->configurationoverlay[slurm-client-gpu]->roles[slurmclient]->powerprofiles]% set disabled no
[basecm11->configurationoverlay*[slurm-client-gpu*]->roles*[slurmclient*]->powerprofiles*]% commit
[basecm11->configurationoverlay[slurm-client-gpu]->roles[slurmclient]]%

With Base View, the equivalent navigation path to the preceding is:

Grouping > Configuration Overlays > slurm-client-gpu > Settings > Roles > slurmclient > Power profiles

The Power profiles parameters as shown in cmsh are:

  1. Disabled: forbids a job from changing workload power profiles (yes by default)

  2. Fail on error: allows prolog and epilog to fail if a workload power profiles change fails for any reason

  3. Job keyword: a keyword, wpps, in the JSON object, used by the WLM job, to specify a workload power profiles setting in the comment field.

  4. Jobs profiles directory: a top directory which includes job ID directories, and used by the job to change the workload power profiles

  5. Debug: setting it to yes enables prolog and epilog debug messages The prolog and epilog then write debug logs to the location set by the Debug log directory parameter,

  6. Debug log directory: directory where prolog and epilog create debug log files per job. The logs take the format: /var/spool/cmd/wlm/wpps/ <JOB ID>.log by default. The log files are not cleaned up automatically.

If WPPS is enabled then:

  • If a job requires static job profiles management, then special BCM prolog and epilog scripts are enabled in Slurm on compute nodes. The scripts parse the SLURM_JOB_COMMENT environment variable that is passed by Slurm. The scripts search for a JSON object that includes the key wpps. The key used can be changed using the Job keyword parameter. The expected format of the JSON object is:

    {"wpps": {"profiles": PROFILES}}

    Here, PROFILES is either

    • a JSON list of strings (workload profile names or their numbers) or

    • a single string (one workload profile name) or

    • a workload profile number.

    The values that PROFILES can take are:

    • max_p

    • max_q

    • llm_training

    • llm_inference

    On matching, the specified profiles are set for all the GPUs on the node that are allocated for the job when the job starts.

    For example, the following job submission command instructs the prolog script to set the workload profiles to max_p and compute:

    $ sbatch --gres=gpu:b100:8 --comment='{"wpps": {"profiles": ["max_p", "compute"]}}' job.sh

    All allocated GPUs on the node get the specified workload profiles, which means that job allocation must be configured to run on that node as a job that excludes other jobs running on it. If the cluster administrator has set oversubscribe (here) for Slurm, then that takes precedence over exclusivity, and must therefore be taken into account.

  • If a job requires dynamic profiles management, then the job process can notify BCM to update the power profiles of specific GPUs during job execution. The prolog creates a directory of the form /var/run/nvidia/workload-power-profiles/<JOB_ID>/ per job. The following files are created within the directory:

    1. username: read-only (for users) file that includes the current job user name. Used by BCM.

    2. uuids: read-only (for users) file that includes a list of GPU UUIDs (one per line) allocated for this job.

    3. profiles: file that can be used by the job process to set new profiles. The file is empty by default. An empty file means that BCM does not modify the profiles. If the job process writes two lines:

      max_p
      compute

      then BCM reads this file almost immediately, and applies these two workload profiles to the GPUs whose UUIDs are specified in uuids file.

What users are running in each workload power profile can be viewed with a PromQL query, as explained here.

Management of node workload profiles using gpuworkloadpowerprofiles, by regular users: The user, for example John, can be given access to checking and managing GPU power profiles by running the allowgpuworkloadpowerprofiles command.

Example

[basecm11->user[john]]% set allowgpuworkloadpowerprofiles yes

The gpuworkloadpowerprofiles command can then be run to check the current node profiles:

Example

[basecm11->device]% gpuworkloadpowerprofiles show -n node001
Node GPU Profiles
------------ -------- ------------
node001 0 COMPUTE(2)
node001 1 MAX_P(0)
node001 2 MAX_P(0)
node001 3 MAX_P(0)
node001 4 MAX_P(0)
node001 5 MAX_P(0)
node001 6 MAX_P(0)
node001 7 MAX_P(0)
[basecm11->device]%

This may be useful for debug purposes.

The BCM script cm-gpu-workload-power-profiles can then be used to change the profiles as follows:

  • The user first gets the GPU UUIDs:

    Example

    root@dgx-gb200-n07-c2:~# nvidia-smi --query-gpu=uuid --format=csv,noheader --id=0,1,2,3
    GPU-1e72bc8d-b967-6031-24bd-c5a08ad090e1
    GPU-3a6ac832-3423-68cc-ed1f-64f2b46d248d
    GPU-f40fabb7-eb9b-0253-4bd5-08b4a12916ea
  • The user can then use the script to change the profile. For example, just for the GPUs 1 and 2:

    Example

    root@dgx-gb200-n07-c2:~# /cm/local/apps/cmd/sbin/cm-gpu-workload-power-profiles -p compute -u john \
    3a6ac832-3423-68cc-ed1f-64f2b46d248d f40fabb7-eb9b-0253-4bd5-08b4a12916ea

    The script carries the profile change out with the help of CMDaemon in the back end.

    Slurm’s prolog and epilog actually work with the script in BCM when carrying out dynamic profiles management, so that the user does not need to use the script manually.

Management of external users to allow them to use profiles: External users, that is users managed by an external LDAP and not managed by the BCM LDAP, can use the workload power profile settings if their user name or UID is added to the file:

/cm/local/apps/cmd/etc/allow-users-wpps.conf

The file must be created on the head node, or on both head nodes if the cluster has HA. The file should have its mode set to 0600. The user name or UID should be added on its own line in the file.

7.5.1.6 Advanced Slurm Job Accounting

PromQL queries can be run and then filtered by Slurm job labels with BCM. The labels are taken either from a job comment or from an account name used by the job. After the labels for the job are extracted, the labeled entity is stored in the monitoring data. The administrator can then run PromQL queries, and filter results by label. Examples of such PromQL queries are the job_gpu_wasted or job_gpu_utilization queries (section 12.4.1).

Extract accounting info must be set to yes to enable labels to be extracted from job comments or account names:

Example

[root@basecm11 ~]# cmsh
[basecm11]% wlm use slurm
[basecm11->wlm[slurm]]% accounting
[basecm11->wlm[slurm]->show]% accounting
Parameter Value
-------------------------------- ------------------------------------------------
Managed hierarchy
Separator _
Job comment labels
Extract accounting info no
[basecm11->wlm[slurm]->accounting]% set extractaccountinginfo yes
[basecm11->wlm*[slurm*]->accounting*]% commit

In addition, the administrator must configure the job comment label format and the format of Slurm account names, if they exist. Without that configuration, BCM cannot parse the labels.

Job comment labels: A user running the job can specify the label for the job comment in a special format. Such a label could be, for example, a tag to indicate the artificial neural network model, where different groups of jobs use different models. The administrator (after having enabled accounting information extraction) can set a regex for the tag in a Job comment field parameter in accounting submode:

Example

[root@basecm11 ~]# cmsh
[basecm11]% wlm use slurm
[basecm11->wlm[slurm]]% accounting
[basecm11->wlm[slurm]->accounting]% set jobcommentlabels model
[basecm11->wlm*[slurm*]->accounting*]% commit

In the preceding example, the label model is set in the monitoring data when the job comment includes a JSON object with model as a key. The value must be a string that will be a value for the label model. For example "model": "llm123". The JSON object may contain other information that will be ignored by BCM when it reads the labels from the comment.

Account name labels: Several labels can be assigned by BCM to a job parsed from an associated account name. The labels can be used to represent a hierarchy of organizational entities, such as department, project, team, and so on. The following configuration options allow this representation:

  1. Managed hierarchy: representation of the account name as a list of organizational entity labels.

  2. Separator: a separator for the labels in the account names. By default this is the underscore character, _. The last entity is separated with double separator. This means that the last entity (and only the last entity) can have a single separator in the name itself.

For instance, if Slurm account names use the following format:

DEPARTMENT_PROJECT_TEAM

then Managed hierarchy values can be set as follows:

Example

[root@basecm11 ~]# cmsh
[basecm11]% wlm use slurm
[basecm11->wlm[slurm]]% accounting
[basecm11->wlm[slurm]->accounting]% set managedhierarchy department project team
[basecm11->wlm*[slurm*]->accounting*]% commit

It is up to the administrator to create the accounting hierarchy in Slurm, and set names as described by the Managed hierarchy parameter.

Example

[root@basecm11 ~]# module load slurm
[root@basecm11 ~]# sacctmgr add account NVIDIA Description="NVIDIA account" Organization=NVIDIA parent=root -i
[root@basecm11 ~]# sacctmgr add account Department1 Organization=NVIDIA parent=NVIDIA -i
[root@basecm11 ~]# sacctmgr add account Department1_Project1 Organization=NVIDIA parent=Department1 -i
[root@basecm11 ~]# sacctmgr add account Department1_Project1__Team_1 Organization=NVIDIA parent=Department1 -i
[root@basecm11 ~]# sacctmgr add account Department1__Team_2 Organization=NVIDIA parent=Department1 -i

In the preceding example two teams have been made. Team 1 is defined according to the full entities hierarchy (department, project, team), while Team 2 is defined only under a department. BCM correctly recognizes such “clipped” hierarchy locations for a team in the account names.

Similar to the Slurm command sshare, an administrator can display the Slurm account hierarchy with the fairshare command in cmsh:

Example

[basecm11->wlm[slurm]]% fairshare -t
Account fairshare raw_shares raw_usage norm_shares norm_usage parent
----------------------------- ------------ ---------- ---------- ----------- ---------- -------------------
root (top account) 0.0 0 0 0.0 0.0
nvidia 0.0 1 0 0.5 0.0 root (top account)
department1 0.0 1 0 1.0 0.0 nvidia
department1__team_2 0.0 1 0 0.333333 0.0 department1
department1_project1 0.0 1 0 0.333333 0.0 department1
department1_project1__team_1 0.0 1 0 0.333333 0.0 department1
root 1.0 1 0 0.5 0.0 root (top account)
[basecm11->wlm[slurm]]% fairshare -f ""
root
├─nvidia
│ └─department1
│ ├─department1__team_2
│ ├─department1_project1
│ └─department1_project1__team_1
└─root

The following command options can be used:

  1. -t|--table: print accounts fairshare parameters as a table

  2. -a|--account <name>: print information for specific account

  3. -f|--fields <PARAMETERS>: display only specified fairshare account parameters (comma-delimited) Format:

    <FIELD>[%<MIN>[-<MAX>]][,<FIELD>[%<MIN>[-<MAX>]],...] ;

    where MIN and MAX are minimum and maximum value lengths. The parameter can be combined with others.

The following example uses labels from both job comment and account names:

Example

[root@basecm11 ~]# su - alice
[alice@basecm11 ~]$ module load slurm
[alice@basecm11 ~]$ sbatch -A department1_project1__team_1 --comment='{"model": "llm123"}' --wrap="hostname"
Submitted batch job 1
[alice@basecm11 ~]$

PromQL queries with these labels are run later on.

In cmsh the administrator can validate how BCM parses the job labels from both job comment and from the Slurm account name:

[basecm11->wlm[slurm]->jobs]% info 1 | grep "accounting info" -i
Accounting info {"department":"department1","model":"llm123","project":"project1","team":"team_1"}
[basecm11->wlm[slurm]->jobs]%

Jobs information can also be displayed by filtering using the labels (some output elided for clarity):

[basecm11->wlm[slurm]->jobs]% filter -i team="team_1"
Job ID Job name User Queue Submit time Start time End time Nodes Exit code
------- ---------- ------ ------- ------------ ----------- --------- --------- ----------
1 wrap alice 13:28:46 13:28:46 13:28:46 1
2 wrap alice defq 13:28:59 13:28:59 13:30:00 node001 0
3 wrap alice defq 13:30:39 13:30:39 13:31:40 node001 0
[basecm11->wlm[slurm]->jobs]%

The following PromQL query (section 12.3) filters the team:

[basecm11->monitoring->labeledentity]% instantquery "job_gpu_wasted{team=\"team_1\"}[1h]"
Name category department group hostname job_id job_name project queue team user wlm ...
--------------- -------- ------------ ------ -------- ------- -------- --------- ------ ------- ------ ----- ...
job_gpu_wasted default department1 alice node001 1 wrap project1 defq team_1 alice slurm ...
job_gpu_wasted default department1 alice node002 2 wrap project1 defq team_1 alice slurm ...

The following query filters the model name:

[basecm11->monitoring->labeledentity]% instantquery "job_gpu_wasted{model=\"llm123\"}[1h]"
Name category group hostname job_id job_name model queue user wlm ...
--------------- -------- ------ -------- -------- -------- -------- -------- ------ ----- ...
job_gpu_wasted default alice node001 1 wrap foo defq alice slurm ...
job_gpu_wasted default alice node002 2 wrap foo defq alice slurm ...

The following query shows what users are running in each WPPS profile:

[basecm11->monitoring->labeledentity]% instantquery -q job_gpu_workload_power_profile_for_user
Name gpu_workload_power_profile user Timestamp ... Value
---------------------------------------- -------------------------- ---------- -----------... -----
job_gpu_workload_power_profile_for_user COMPUTE avolkov Mon Jun 2 ... 2
job_gpu_workload_power_profile_for_user LLM_INFERENCE avolkov Mon Jun 2 ... 2133
job_gpu_workload_power_profile_for_user LLM_INFERENCE root Mon Jun 2 ... 23
job_gpu_workload_power_profile_for_user LLM_INFERENCE shoreline Mon Jun 2 ... 336
job_gpu_workload_power_profile_for_user LLM_INFERENCE wglantz Mon Jun 2 ... 12
job_gpu_workload_power_profile_for_user LLM_TRAINING root Mon Jun 2 ... 7
job_gpu_workload_power_profile_for_user LLM_TRAINING shoreline Mon Jun 2 ... 331
job_gpu_workload_power_profile_for_user MAX_P avolkov Mon Jun 2 ... 2134
job_gpu_workload_power_profile_for_user MAX_P root Mon Jun 2 ... 60
job_gpu_workload_power_profile_for_user MAX_P shoreline Mon Jun 2 ... 379
job_gpu_workload_power_profile_for_user MAX_P wglantz Mon Jun 2 ... 12
job_gpu_workload_power_profile_for_user MAX_Q root Mon Jun 2 ... 8
job_gpu_workload_power_profile_for_user MAX_Q shoreline Mon Jun 2 ... 320

7.5.1.7 Slurm PRS Settings

Power Reservation Steering (PRS) and its deployment is covered in Chapter 10 of the NVIDIA Mission Control Manual.

The prssettings submode in wlm mode configures the certificate paths used by the Slurm PRS plugin.

Example

[basecm11->wlm[slurm]->prssettings]% show
Certificate path /cm/local/apps/prs/etc/${WLM_NAME}.pem
Private key path /cm/local/apps/prs/etc/${WLM_NAME}.key

The Certificate path and Private key path settings specify the TLS certificate and key used for secure communication with the PRS service. The ${WLM_NAME} variable is automatically substituted with the name of the WLM instance.

7.5.1.8 Configuring Slurm

After Slurm setup is configured and installed with cm-wlm-setup (section 7.3), the Slurm software components are installed in a symlinked directory /cm/local/apps/slurm/current. The same set of Slurm packages should be installed on the head nodes and in each software image where any of the Slurm services run.

Slurm clients and servers can be configured to some extent using role assignment (sections 7.4.1 and 7.4.2).

Using cmsh, advanced option parameters can be set under the slurmclient and slurmserver roles. The settings for the roles can be done at configuration overlay, category, or node level (sections 2.1.5, 2.1.6).

By default, the cm-wlm-setup utility configures Slurm using configuration overlays.

Example

[basecm11->configurationoverlay]% list
Name (key) Priority All head nodes Nodes Categories Roles
-------------------- ---------- -------------- ---------------- ---------------- ----------------
slurm-accounting 500 yes slurmaccounting
slurm-client 500 no default slurmclient
slurm-server 500 yes slurmserver
slurm-submit 500 no default slurmsubmit
wlm-headnode-submit 600 yes slurmsubmit

The settings within the roles can be viewed and modified. For example, the slurmclient role of the slurm-client configuration overlay can be viewed:

Example

[basecm11->configurationoverlay]% roles slurm-client
[basecm11->configurationoverlay[slurm-client]->roles]% show slurmclient
Parameter Value
-------------------------------- ------------------------------------------------
Name slurmclient
Revision
Type SlurmClientRole
Add services yes
WLM cluster slurm
Slots 0
All Queues no
Queues defq
Features
Sockets 0
Cores Per Socket 0
ThreadsPerCore 0
Boards 0
SocketsPerBoard 0
RealMemory 0B
NodeAddr
Weight 0
Port 0
TmpDisk 0
Reason
CPU Spec List
Core Spec Count 0
Mem Spec Limit 0B
GPU auto detect BCM
Node Customizations <0 in submode>
Generic Resources <0 in submode>
Cpu Bindings None
Slurm hardware probe autodetect yes
Memory autodetection slack 0.0%
IMEX no

Assigning nodes to Slurm queues:

Slurm can configure nodesets (man slurm.conf.5). Nodesets are a way to conveniently group nodes under a unique arbitary name, so that features can be assigned to a group of nodes.

Starting with BCM version 11, BCM can be used to configure Slurm nodesets using the Nodesets and Nodeset features options within the slurmclient role options:

  • Nodesets: An arbitrary name can be set for the Nodesets parameter. Names that are set are automatically added to slurm.conf. Nodes with the slurmclient role are then associated with this arbitrary nodeset name in slurm.conf. For example, if the nodesets parameter is set to ns1 and the role is assigned only to node node001, then BCM translates this configuration after a short time into a slurm.conf line that looks like:

    NodeSet=ns1 Nodes=node001

    In an express Slurm setup by cm-wlm-setup (here), the slurmclient role is set by default for all nodes using the configuration overlay. This means that setting the nodesets parameter in the slurmclient role there sets it for all nodes. After a short while, the NodeSet line in slurm.conf changes to match the parameter change:

    Example

    [basecm11->configurationoverlay[slurm-client]->roles[slurmclient] get nodesets
    [basecm11->configurationoverlay[slurm-client]->roles[slurmclient] set nodesets ns1; commit
    then, after a minute or so:
    [basecm11->...->roles[slurmclient] !grep -i nodeset /cm/shared/apps/slurm/etc/slurm/slurm.conf
    [basecm11->...->roles[slurmclient] NodeSet=ns1 Nodes=node[001-003] for a 3-node cluster
  • Nodeset features: All values of the Nodeset features parameter are added to nodes that have the slurmclient role. They are added as Slurm node features, which means that there is no need to duplicate them in the Features parameter of the slurmclient role. The values that are set are a list of strings.

    The Slurm nodesets are added to slurm.conf with the same name as these features. This is useful when the administrator needs to assign sets of nodes to queues based on the node features.

    For example, if the parameter has a value bigmem, and the slurmclient role is assigned to node node001, then BCM adds lines with:

    NodeName=node001 Features=bigmem ...
    and
    NodeSet=bigmem Feature=bigmem
    to slurm.conf.

    For the 3-node case specified by the configuration overlay of earlier, the change is illustrated by the following:

    Example

    [basecm11->...->roles[slurmclient]]% get nodesetfeatures
    [basecm11->...]->roles[slurmclient]]% !grep -i ^Node /cm/shared/apps/slurm/etc/slurm/slurm.conf
    NodeName=node[001-003] ... Features=location=local
    NodeSet=ns1 Nodes=node[001..003]
    [basecm11->...->roles[slurmclient]]% set nodesetfeatures bigmem
    ...wait a little for the change to happen...
    [basecm11->...->roles[slurmclient]]% !grep -i ^Node /cm/shared/apps/slurm/etc/slurm/slurm.conf
    NodeName=node[001-003] ... Features=location=local,bigmem
    NodeSet=ns1 Nodes=node[001-003]
    NodeSet=bigmem Feature=bigmem

    The Nodeset features parameter does not automatically add the nodesets to any queues. The administrator must add the nodesets to the queues separately.

Specifying nodesets for Slurm using wlm mode with jobqueues, vs specifying nodes using the slurmclient role’s queues parameter: Specifying which nodes go into Slurm job queues can be specified using either nodesets or nodes.

  • The administrator can specify which nodesets are included in Slurm job queues by setting the nodesets parameter for a job queue, within a jobqueue submode.

    For example, the nodeset ns1 defined in the slurmclient role earlier can be included in defq with:

    Example

    root@basecm11:~# cmsh
    [basecm11]% wlm jobqueue
    [basecm11->wlm[slurm]->jobqueue]% use defq
    [basecm11->wlm[slurm]->jobqueue[defq]]% set nodesets ns1; commit

    If the nodesets parameter is set for a queue, then BCM does not add any nodes that are specified by the Compute nodes parameter, but only adds the nodes in the nodesets specification to a line with the format:

    PartitionName=... Nodes= <nodesets> ...

    in slurm.conf. As a reminder, a queue in Slurm terminology is a partition.

  • The administrator can specify the nodes that are associated with a job queue.

    • Prior to BCM version 11, job queues were specified for nodes only by using the queues parameter of the slurmclient role at the device, category, or configurationoverlay mode level.

      For example, for the configuration overlay slurm-client that defines the Slurm client configuration by default, the nodes for the Slurm client role are the nodes in the default category default. Within the configuration overlay, within the slurmclient role, the default queue to be used is set to defq by default:

      Example

      root@basecm11:~# cmsh
      [basecm11]% configurationoverlay use slurm-client
      [basecm11->configurationoverlay[slurm-client]]% get categories
      default
      [basecm11->configurationoverlay[slurm-client]]% roles
      [basecm11->configurationoverlay[slurm-client]->roles]% use slurmclient
      [basecm11->configurationoverlay[slurm-client]->roles[slurmclient]]% get queues
      defq
    • Starting with BCM version 11, the administrator can also add nodes to queues directly from within wlm mode for a particular WLM, within the jobqueue mode for a particular queue, by setting nodes for particular node grouping parameters. For example, for Slurm the following queue parameters are available:

      Example

      [basecm11->wlm[slurm]->jobqueue[defq]]% show | egrep -i '(overlay|nodegroups|compute|catego|nodeset)'
      Nodesets
      Overlays
      Categories
      Nodegroups
      Compute nodes

      Thus defq is used by nodes that have been specified in the following groupings:

      • Nodesets: nodes in these nodesets

      • Overlays: nodes in these configuration overlays (including nodes of categories that are in this overlay)

      • Categories: nodes in these categories

      • Nodegroups: nodes in these node groups

      • Compute nodes: nodes listed in this parameter

Slurm Hardware Autodetection (non-GPU): The setting Slurm hardware probe autodetect in the Slurm role enables automated hardware detection for Slurm for non-GPU hardware. (Specifically for GPUs is the related Slurm GPU auto detect setting (here)).

Slurm hardware probe autodetect enables detection for the following Slurm parameters:

  • corespersocket

  • threadspercore

  • boards

  • socketsperboard

  • sockets

  • realmemory

The autodetected parameters are placed in the NodeName line in slurm.conf.

The Slurm client role parameters can be modified. For example Core Spec Count:

Example

[basecm11->configurationoverlay[slurm-client]->roles]% set slurmclient corespeccount 2
[basecm11->configurationoverlay*[slurm-client*]->roles*]% commit

As usual, values set at node level override the values set at categories and configuration overlays level.

For example, to set corespeccount to 4, only for node001 but not for other nodes, the session might run further as:

Example

[basecm11->configurationoverlay[slurm-client]->roles]% device use node001
[basecm11->device[node001]]% roles
[basecm11->device[node001]->roles]% assign slurmclient
[basecm11->device*[node001*]->roles*[slurmclient*]]% set corespeccount 4
[basecm11->device*[node001*]->roles*[slurmclient*]]% commit
Field Message
------------------------ ----------------------------------------------------------------
wlmCluster Error: The WLM cluster should be set
[basecm11->device*[node001*]->roles*[slurmclient*]]% wlm list
Type Name (key) Server nodes Submit nodes Client nodes
------ ------------------------ ------------ ---------------- ----------------
Slurm slurm basecm11 basecm11,node001 node001,node001
[basecm11->device*[node001*]->roles*[slurmclient*]]% set wlmcluster slurm
[basecm11->device*[node001*]->roles*[slurmclient*]]% commit

In the preceding session, the role needs to be assigned at node level with assign slurmclient because it does not initially exist at node level. If it already existed, then use slurmclient could have been used to descend into that role.

Also in the preceding session, one of the values that the Slurm client needs to know is wlmcluster, which decides which WLM it is to work with on the cluster. The value is selected from the list of WLM instance names in wlm mode.

The level of the active role can be seen with the list command. For example, the Slurm client role assignment at node level is seen here:

Example

[basecm11->device[node001]->roles[slurmclient]]% list
Name (key)
-----------------------------------
[overlay:slurm-submit] slurmsubmit
slurmclient

Removing the assignment has the list command display the configuration overlay Slurm client role assignment:

Example

[basecm11->device[node001]->roles[slurmclient]]% unassign slurmclient; commit
[basecm11->device[node001]->roles[slurmclient]]% list
Name (key)
-----------------------------------
[overlay:slurm-submit] slurmsubmit
[overlay:slurm-client] slurmclient

Slurm Hardware Autodetection For GPUs: The Slurm GPU auto detect setting is a setting seen in the session output here. It manages Slurm GRES configuration (https://slurm.schedmd.com/gres.conf.html) automatically, and can be set:

  • globally, for all Slurm compute nodes in a Slurm instance, from within the wlm mode of cmsh

  • for a particular role, such as in a device role, a category role, and a configuration overlay role for a Slurm client

    Example

    [basecm11->configurationoverlay[slurm-client]->roles[slurmclient]]% set gpuautodetect <TAB><TAB>
    bcm none nrt nvml off oneapi rsmi

If GPU auto detect is assigned a value, then a corresponding value is assigned to the autodetect parameter in Slurm’s gres.conf file. One out of 7 values can be assigned to GPU auto detect:

  1. bcm: to use BCM values, which are the values that CMDaemon automatically puts in for the vendor (NVIDIA, Intel, AWS, AMD) and for the number of GPUs.

  2. none: to not have the autodetect parameter exist in gres.conf. In this case, there is actually no corresponding value that can be assigned to the autodetect of gres.conf.

  3. nrt: to detect AWS Trainium/Inferentia devices. <— not yet, in October 2024, trunk, or bcm10.24.09

  4. nvml: to detect NVIDIA GPUs.

  5. off: to turn Slurm GPU autodetection off.

  6. oneapi: to detect Intel GPUs.

  7. rsmi: to detect AMD GPUs

Slurm GPU autodetection is described further here.

Slurm accounting database configuration in cmsh: After package setup is carried out with cm-wlm-setup (section 7.3), cmsh can be used to modify the settings for the Slurm accounting database. Changes can be carried out in the slurm-accounting configuration overlay:

[basecm11->configurationoverlay[slurm-accounting]]% show
Parameter Value
-------------------------------- ---------------------------
Name slurm-accounting
Revision
All head nodes no
Priority 500
Nodes node001,node002
Categories
Roles slurmaccounting
Customizations <0 in submode>

In the preceding overlay, slurmdbd runs on the accounting node(s). It is possible to run slurmdbd on both head nodes or on one or two compute nodes, as set in the configuration overlay. It is not possible to mix up head nodes and compute nodes for this configuration, and it is not possible to run slurmdbd on more than two nodes.

Further Slurm accounting changes can be carried out within the slurmaccounting role:

[basecm11->configurationoverlay[slurm-accounting]->roles[slurmaccounting]]% show
Parameter Value
-------------------------------- --------------------------
Name slurmaccounting
Revision
Type SlurmAccountingRole
Add services yes
High availability yes
Primary accounting server node001
DbdPort 6819
StorageHost node001
StoragePort 3306
StorageLoc slurm_acct_db
StorageUser slurm

The primaryaccountingserver parameter defines which node is primary, that is, which one is AccountingStorageHost in slurm.conf. The other node setting in the configuration overlay is the AccountingStorageBackupHost.

StorageHost, StoragePort, StorageLoc and StorageUser are settings for connecting to the MySQL database, If these are for an external host, then they must be configured manually so that they are reachable by the nodes running slurmdbd.

The highavailability parameter sets the high availability mode for slurmdbd. If set to yes, then the service runs on both nodes at the same time.

Generic resources (gres) configuration in Slurm: In order to configure generic resources, the genericresources mode can be used to set a list of objects. Each object then represents one generic resource available on nodes.

Each value of name in genericresources must already be defined in the list of GresTypes. The list of GresTypes is defined in the wlm role for the instance.

Example

[basecm11->wlm[slurm]]% get grestypes
gpu

Several generic resources entries can have the same value for name (for example gpu), but must have a unique alias. The alias is a string that is used to manage the resource entry in cmsh or in Base View. The string is enclosed in square brackets in cmsh, and is used instead of the name for the object. The alias does not affect Slurm configuration.

For example, to add two GPUs for all the nodes in the default category which are of type k20xm, and to assign them to different CPU cores, the following cmsh commands can be run:

Example

[basecm11]% configurationoverlay use slurm-client
[basecm11->configurationoverlay[slurm-client]]% roles
[basecm11->configurationoverlay[slurm-client]->roles*]% use slurmclient
[...[slurmclient]]% genericresources
[...[slurmclient]->genericresources]% add gpu0
[...[slurmclient*]->genericresources*[gpu0*]]% set name gpu
[...[slurmclient*]->genericresources*[gpu0*]]% set file /dev/nvidia0
[...[slurmclient*]->genericresources*[gpu0*]]% set cores 0-7
[...[slurmclient*]->genericresources*[gpu0*]]% set type k20xm
[...[slurmclient*]->genericresources*[gpu0*]]% add gpu1
[...[slurmclient*]->genericresources*[gpu1*]]% set name gpu
[...[slurmclient*]->genericresources*[gpu1*]]% set file /dev/nvidia1
[...[slurmclient*]->genericresources*[gpu1*]]% set cores 8-15
[...[slurmclient*]->genericresources*[gpu1*]]% set type k20xm
[...[slurmclient*]->genericresources*[gpu1*]]% commit
[...[slurmclient]->genericresources[gpu1]]% list
Alias (key) Name Type Count File
----------- -------- -------- -------- ----------------
gpu0 gpu k20xm /dev/nvidia0
gpu1 gpu k20xm /dev/nvidia1
[...[slurmclient]->genericresources[gpu1]]%

Typically this configuration is done automatically during the GPU configuration process as outlined in the GPU Configuration Screens section here, where a configuration overlay for the GPUs is given the default name slurm-client-gpu.

In Base View, the navigation path:

Grouping > Configuration Overlays > slurm-client-gpu > Settings > Roles > slurmclient > Generic resources > + Add

provides the equivalent (figure 7.22):

Base View access to NVIDIA GPU configuration options

Figure 7.22: Base View access to NVIDIA GPU configuration options

After the generic resources are committed, BCM updates the gres.conf file.

Since NVIDIA Base Command Manager version 8.2, a single gres.conf configuration file, located at /cm/shared/apps/slurm/etc/slurm/gres.conf is used.

If the category consists of node001 and node002, then the entries to the gres.conf file in this case would look like:

Example

# This section of this file was automatically generated by cmd. Do not edit manually!
# BEGIN AUTOGENERATED SECTION -- DO NOT REMOVE
NodeName=node[001,002] Name=gpu Type=k20xm Count=1 File=/dev/nvidia0 Cores=0-7
NodeName=node[001,002] Name=gpu Type=k20xm Count=1 File=/dev/nvidia1 Cores=8-15
# END AUTOGENERATED SECTION -- DO NOT REMOVE
[root@basecm11 ~]#

Slurm topology configuration:

Slurm supports topology-aware resource allocation to optimize job performance. BCM supports configuration for the topology/tree and topology/block Slurm plugins using the topograph service (here):

  • topology/tree: models the cluster network as a hierarchical structure, where Slurm allocates resources to jobs to minimize network contention. Nodes are grouped under leaf switches, which connect to higher-level switches. The plugin helps to allocate nodes that are close together in the network hierarchy. The plugin requires all nodes for a single job be connected using switches. The configuration of the plugin is defined using switches and their relationships.

  • topology/block: models the network as non-overlapping blocks of nodes. The plugin aims to keep jobs contiguous within blocks for better communication. The plugin does not require all nodes to be part of blocks. The configuration is defined using blocks of nodes and their groupings.

The network topology configuration for a Slurm instance <slurmcluster> is described by:
/cm/shared/apps/slurm/etc/ <slurmcluster>/topology.conf

The file is modified in an autogenerated section when the cluster administrator modifies the internal topology settings in BCM, or when the topology arrangement record is fetched from Topograph, the topology generation service (here). The topology settings can be modified in BCM via the topologysettings submode of the WLM instance in cmsh:

Example

[root@basecm11 ~]# cmsh
[basecm11]% wlm use slurm
[basecm11->wlm[slurm]]% topologysettings
[basecm11->wlm[slurm]->topologysettings]% show
Located Parameter Value
-------------------------------- ------------------------------------------------
Topology plugin Block
Topology source Internal
Parameters <submode>
Tree settings <submode>
Block settings <submode>
Topograph settings <submode>

A visualization (figure 7.23) of topologysettings, and its submodes and settings may be useful when reading the contents of this section:

Visualization of settings under topologysettings

Figure 7.23: Visualization of settings under topologysettings

BCM allows a topology configuration to be generated for both the topology/tree and topology/block Slurm plugins. By default neither of these plugins is enabled. To enable topology generation, the administrator can select the plugin type within WLM mode using the Topology plugin parameter, and can select the Topology source:

[root@basecm11 ~]# cmsh
[basecm11]% wlm use slurm
[basecm11->wlm[slurm]]% set topologyplugin{<TAB><TAB>}
3d torus block default none tree
[basecm11->wlm*[slurm*]]% set topologyplugin tree
Tree
[basecm11->wlm*[slurm*]]% set topologysource{<TAB><TAB>}
internal none topograph
[basecm11->wlm*[slurm*]]% set topologysource internal
[basecm11->wlm*[slurm*]]% commit

By default, both Topology source and Topology plugin are set to none, which means that topology.conf is not updated by BCM.

Within topologysettings, the Topology plugin parameter configures plugins in the Slurm-related .conf files:

Example

[basecm11->wlm[slurm]->topologysettings]% set topologyplugin{<TAB><TAB>}
3d torus block default none tree
  • none: no plugin is configured in slurm.conf

  • default: the topology/default plugin is set in slurm.conf

  • 3d torus: the topology/3d_torus plugin is set in slurm.conf

  • block: the topology/block plugin is set in slurm.conf and topology.conf is updated

  • tree: the topology/tree plugin is set in slurm.conf and topology.conf is updated

The topology settings can be configured in a similar way in Base View.

Within topologysettings, there are these 4 submodes: Parameters, Tree settings, Block settings, and Topograph settings:

  1. The parameters submode manages parameters that are common for all plugins:

    Example

    [basecm11->wlm[slurm]->topologysettings]% parameters
    [basecm11->wlm[slurm]->topologysettings->parameters]% show
    Parameter Value
    -------------------------------- ------------------------------------------------
    Dragonfly no
    Route part no
    Switch as node rank no
    Route tree no
    Topo Optional no

    These correspond to values of TopologyParam in slurm.conf (man slurm.conf.5).

  2. The treesettings submode allows access to some parameters that modify the topology for the topology/tree plugin:

    Example

    [basecm11->wlm[slurm]->topologysettings]% treesettings
    [basecm11->wlm[slurm]->topologysettings->treesettings]% show
    Parameter Value
    -------------------------------- ------------------------------------------------
    Topology switches
    Topology ephemeral switches yes

    The treesettings parameters are:

    • topologyephemeralswitches: A boolean to allow ephemeral switches to be added to topology.conf

    • topology switches: A Slurm cluster configuration parameter that defines the list of switches used to write the topology file:

      Example

      [basecm11->wlm[slurm]->topologysettings->treesettings]% set topologyswitches switch01 switch02 switch03
      [basecm11->wlm[slurm*]]% commit

      The switches-to-nodes mapping does not require the switch devices to exist. The mapping can be defined in one of the following ways:

      • Definitions using the switchports parameter: the port definitions (here) for a node or a switch must normally be configured to let BCM construct the topology tree in topology.conf. The definitions can be carried out using their switchports parameter:

        Example

        [root@basecm11 ~]# cmsh
        [basecm11]% device use node001
        [basecm11->device[node001]]% set switchports switch01:3
        [basecm11->device[node001*]]% commit
        [basecm11->device[node001]]% use switch01
        [basecm11->device[switch01]]% set switchports switch02:15
        [basecm11->device[switch01*]]% commit
      • Definitions using the SlurmTopology parameter: the Slurm network topology can be configured without configuring the ports in BCM, by using their SlurmTopology parameter:

        Example

        [root@basecm11 ~]# cmsh
        [basecm11]% device
        [basecm11->device]% set node001 -e SlurmTopology switch02 switch01
        [basecm11->device*]% set node002 -e SlurmTopology switch02 switch01
        [basecm11->device*]% set node003 -e SlurmTopology switch03
        [basecm11->device*]% commit

        The preceding example populates the autogenerated section of topology.conf as follows:

        Example

        SwitchName=switch01 Switches=switch02
        SwitchName=switch02 Nodes=node[001,002]
        SwitchName=switch03 Nodes=node003

      The following AdvancedConfig directives (here) can be used to control the topology parameters layout further.

      • SlurmStraightExtraTopology: If set to a value of 0, then the order of switches is reversed when setting the extra values. For example, to get the same content of topology.conf as in the preceding example, the following lines can then be committed:

        Example

        [root@basecm11 ~]# cmsh
        [basecm11]% device
        [basecm11->device]% set node001 -e SlurmTopology switch01 switch02
        [basecm11->device*]% set node002 -e SlurmTopology switch01 switch02
        [basecm11->device*]% set node003 -e SlurmTopology switch03
        [basecm11->device*]% commit

        In topology/plugin configuration, switches and nodes cannot both be connected to the same switch. This is consistent with the description in man topology.conf.5. If the configuration in BCM has both nodes and switches connected to the same switch, then only the nodes-to-switch connection is written to topology.conf.

      • SlurmConcatTopologySwitchName: If set to 1, then it allows concatenation of the switch names in the topology defined using the SlurmTopology node extra setting. The SlurmTopology setting is described earlier on. The concatenation starts in order of parent switches first. Thus, switch switch02 that is directly connected to switch switch01 is named switch01-switch02 in topology.conf.

        Example

        [root@basecm11 ~]# cmsh
        [basecm11]% device
        [basecm11->device]% set node001 -e SlurmTopology switch01 switch03
        [basecm11->device*]% set node002 -e SlurmTopology switch01 switch03
        [basecm11->device*]% set node002 -e SlurmTopology switch01 switch03
        [basecm11->device*]% set node003 -e SlurmTopology switch01 switch03
        [basecm11->device*]% set node003 -e SlurmTopology switch01 switch03
        [basecm11->device*]% set node004 -e SlurmTopology switch02 switch03
        [basecm11->device*]% set node005 -e SlurmTopology switch02 switch03
        [basecm11->device*]% set node006 -e SlurmTopology switch02 switch03
        [basecm11->device*]% commit

        The preceding results in the following content within topology.conf:

        Example

        SwitchName=switch03 Switches=switch03-switch[01,02]
        SwitchName=switch03-switch01 Nodes=node[001-003]
        SwitchName=switch03-switch02 Nodes=node[004-006]
  3. The blocksettings submode under topologysettings is where the topology/block plugin settings are located:

    Example

    [basecm11->wlm[slurm]->topologysettings]% blocksettings
    [basecm11->wlm[slurm]->topologysettings->blocksettings]% show
    Parameter Value
    -------------------------------- ------------------------------------------------
    Block entity NodeGroup
    Block sizes 2 4

    The parameters of the topology/block plugin are:

    • Block entity: what BCM entity type defines a block. Possible entity type values are:

      • nodegroup: if a node is in several nodegroups then it goes to the first block

      • rack: if a pair of racks is configured as twins, then nodes from both racks go to a single block

      Nodes with a slurmclient role that belong to the specified entity are grouped in a single block. For instance, if two nodegroups are defined in BCM as:

      • ng1: a nodegroup that includes node001 and node002, both with the slurmclient role
        and

      • ng2: a nodegroup that includes node003 and node004, both with the slurmclient role

      then topology.conf is updated with the following lines:

      Example

      BlockName=ng1 Nodes=node[001,002]
      BlockName=ng2 Nodes=node[003,004]
    • Block sizes: corresponds to the parameter in topology.conf with the same name. It displays a list of the planning base block size, alongside any higher-level block sizes that would be enforced. More details can be found in man topology.conf.5.

  4. Topograph settings can be found within the topographsettings submode, under topologysettings. The settings are described further on.

Topograph service integration: A topograph in real life can be a monument that shows important geographical properties (for example altitude, latitude, roads, and so on) in a very visible location (typically on a hilltop). In BCM, Topograph is used to mean the topological record that is visible to the cluster manager in BCM. Topograph runs as a system service, and BCM fetches topology information from the service when required, updating topology.conf as needed.

Currently, Topograph, when used with cloud services, supports only cloud GPU nodes that are supported by the topology API that the cloud providers provide. The nodes in the cloud must exist—that is, it must be possible to stop them—during topology generation. If Topograph cannot get the topology for a node, then the node in topology.conf is put under a special fake switch (if node is set to tree topology) or block (if the node is set to block topology).

Basic Topograph configuration with some default settings is carried out with cm-wlm-setup (here), as part of Topology configuration.

The integration between BCM and Topograph can then be further configured within the topographsettings submode:

Example

[basecm11->wlm[slurm]->topologysettings]% topographsettings
[basecm11->wlm[slurm]->topologysettings->topographsettings]% show
Parameter Value
-------------------------------- ------------------------------------------------
Hostname localhost
Config path /etc/topograph/topograph-config.yaml
HTTP parameters
Pass cloud credentials yes
Fetch timeout 20
Fetch attempts 12
Fetch wait time 15

The Topograph settings are:

  • Hostname: the hostname where these settings run

  • Config path: a path for the YAML configuration of the Topograph settings

  • HTTP parameters: used to pass a string of HTTP parameters to the HTTP API service

  • Pass cloud credentials: if set to yes, then cloud service provider credentials are passed on to the topology generator

  • Fetch timeout: the Topograph API timeout value (in seconds)

  • Fetch attempts: the number of attempts to carry out when trying to get a topology from Topograph

  • Fetch waittime: the wait time between fetch attempts (in seconds)

and there are also extra settings, which are used with default values when configuring Topograph manually:

  • HttpPort: the tcp port used by Topograph to listen on (default: 49021)

  • HttpSSL: is Topograph using SSL? (default: true)

  • RequestAggregationDelay: delay for request aggregation (default: 15s)

  • PageSize: number of results per API call (default: 100)

  • SSLCertPath: server certificate path (default: /etc/topograph/ssl/server-cert.pem)

  • SSLCertKeyPath: server certificate key path (default: /etc/topograph/ssl/server-key.pem)

  • SSLCACert: certificate authority certificate path (default: /etc/topograph/ssl/ca-cert.pem)

  • version4: when set to true, BCM uses the Topograph 4 API. This setting requires the topograph4 package (see “Using Topograph 4” below).

The service has its own configuration file, topography-config.yaml, which is managed by BCM. The administrator can modify it manually if necessary, to put in settings that are outside of the group of standard and extra topograph settings listed in the preceding text.

If standard or extra topography settings in the navigation path:

cmsh > wlm > topologysettings > topographsettings

are set, then the topography-config.yaml file synchronizes its values from there. That is, no manual changes are typically needed in BCM-managed clusters for the BCM-managed variables.

If the node running the Topograph service is not the node running the Slurm server, then all certificate paths must be in a shared location, such as /cm/shared, and the token UPDATE_TOPOLOGY_TOKEN must be added to the profile node. Profiles are described in section 6.5.

All certificates are managed by BCM and must share the same certificate authority file path.

BCM uses the script /cm/local/apps/cmd/scripts/topograph.certs.sh to generate all certificates. An alternative certificate generator can be set by the administrator using the AdvancedConfig directive (here) TopographCertificatesScript to set a custom script path, to use the same environment variables and options.

If no automatic script generation is wanted then it can be disabled by setting the AdvancedConfig directive TopographSkipCertificates to yes:

[root@basecm11~]# cm-manipulate-advanced-config.py TopographSkipCertificates=yes
Updated: /cm/local/apps/cmd/etc/cmd.conf
Topology configuration with cm-wlm-setup:

The topology source can be configured using cm-wlm-setup (figure 7.24), along with some settings:

Topology source configuration in cm-wlm-setup

Figure 7.24: Topology source configuration in cm-wlm-setup

If the topology source is Topograph, then a specific node can be selected (figure 7.25):

Topograph node configuration in cm-wlm-setup

Figure 7.25: Topograph node configuration in cm-wlm-setup

The configuration sets all the extra values of section 7.5.1.8, it installs the Topograph service on the software image or in the node if necessary, and adds UPDATE_TOPOLOGY_TOKEN to the node profile in cmsh, if the Topograph node and Slurm server nodes are different.

The plugin can also be configured with cm-wlm-setup (figure 7.26):

Topology plugin configuration in cm-wlm-setup

Figure 7.26: Topology plugin configuration in cm-wlm-setup

For more advanced and specific configurations, a further manual configuration is necessary.

Configuring topology manually:

The topograph package is available from the BCM repositories for Ubuntu 22.04 and later, and for RHEL9-compatible distributions:

Example

root@basecm11:~# apt install topograph
...
Need to get 30.1 MB of archives.
After this operation, 0 B of additional disk space will be used.
...

After picking up the package, the service can be set up on any node. The hostname parameter in topographsettings is set to localhost by default, which is taken from the node that has the slurmserver role assigned to it. The value should be the Topograph server hostname or IP address, which means that if the Topograph service is running on a node without the slurmserver role, then the value must be manually adjusted.

Typically, since slurmserver usually runs on the head node, topograph also runs on the head node, and if the cluster is an HA cluster (Chapter 15) then it should be set up on both head nodes.

The service can be set up on the head node(s) in BCM using the services submode of device mode:

Example

[basecm11->device[basecm11]]% services
[basecm11->device[basecm11]->services]% add topograph
[basecm11->device*[basecm11*]->services*[topograph*]]% set autostart yes
[basecm11->device*[basecm11*]->services*[topograph*]]% set monitored yes
[basecm11->device*[basecm11*]->services*[topograph*]]% set managed yes
[basecm11->device*[basecm11*]->services*[topograph*]]% commit
[basecm11->device[basecm11]->services[topograph]]% status
Service Status
--------------------------- -----------
topograph [ UP ]
repeated for the other head node if using HA

The certificates for the topograph service are generated automatically. The certificates are used by BCM to carry out service API calls.

After restarting CMDaemon on nodes with the slurmserver role with:

systemctl restart cmd

a topology.conf file is generated in /cm/shared/apps/slurm/etc/ <slurmcluster>/topology.conf.

A Slurm topology configuration for the Slurm topology/tree plugin (https://slurm.schedmd.com/topology.conf.html) is generated if a Slurm compute node is affected by:

  • poweroff, shutdown, or power up

  • creation or termination in cloud nodes

  • a Slurm-related configuration change due to a BCM configuration change

Using Topograph 4:

From BCM 11.34, Topograph 4 is available via the topograph4 package. The topograph4 and topograph packages conflict and cannot both be installed on the same software image or node. The topograph package (Topograph 3.x) is installed by default.

To use Topograph 4, both of the following steps are required:

  1. The topograph package is removed and topograph4 is installed:

    For Ubuntu distributions:

    Example

    root@basecm11:~# apt remove topograph
    root@basecm11:~# apt install topograph4

    For RHEL-based distributions, yum can resolve the package conflict directly with the --allowerasing option, which removes topograph as part of installing topograph4:

    Example

    [root@basecm11 ~]# yum install --allowerasing topograph4
  2. The version4 extra value is set in topographsettings:

    Example

    [basecm11->wlm[slurm]->topologysettings->topographsettings]% set -e version4 true
    [basecm11->wlm*[slurm*]->topologysettings*->topographsettings*]% commit

Both steps are required. Installing topograph4 without setting version4 to true, or setting version4 to true while the topograph package is still installed, causes the Topograph service to fail.

The version4 extra value is a setting on the Slurm WLM instance, not a per-node setting, so it only needs to be set once, regardless of how many nodes run Topograph.

topograph4 must be installed on every node on which topograph is currently running. On an HA cluster (Chapter 15), that means both head nodes, matching the placement described in the preceding text. If Topograph runs from a software image rather than only on head nodes, topograph4 must be installed into the image (section 9.4.1) and the standard updateprovisioners (section 5.2.4.4) and imageupdate (section 5.6.2) commands must be used to propagate the change to the running nodes, rather than it being installed directly on a running node.

Installing topograph4 replaces the systemd unit that was installed by the topograph package. As with other BCM-managed services whose systemd unit changes (for example, the slurmd service after a Slurm software-image upgrade, section 7.5.1.3), the systemd unit files must be reloaded and the service restarted on every node where topograph4 was just installed, following the placement described in the preceding paragraph:

Example

[root@basecm11 ~]# systemctl daemon-reload
cmsh -c "device services basecm11; use topograph; restart"

The FakeNodes and FakeNodesPool extra settings, which were special values used in earlier versions of some Slurm clusters, are no longer needed in recent versions of Slurm, and are not supported in Topograph 4. If these settings are configured when version4 is active, BCM logs a warning and ignores them.

To revert to Topograph 3, the version4 extra value must be cleared, and the topograph package reinstalled on every node currently running topograph4 – directly on the node if it was installed there (for example, a head node), or in the software image, followed by updateprovisioners and imageupdate, if it was installed via a software image.

For cloud service providers

managed by BCM there are some extra considerations for the topograph service:

  • For AWS clouds the compute nodes must be running (exist), and must have a flavor that supports the AWS topology API (https://docs.aws.amazon.com/AWSEC2/latest/UserGuide/ec2-instance-topology.html). One of the supported flavors is the p5.48xlarge instance currently used by DGX Cloud.

    Requirements:

    • To access the AWS instance topology API using the topograph service, a prerequisite for an IAM identity is to have permissions for ec2:DescribeInstanceTopology. This permission can be enabled through an AWS-managed policy called AmazonEC2ReadOnlyAccess.

    • Topograph needs credentials to perform the AWS API call.

      • If the administrator sets the value of Pass cloud credentials to yes, then BCM sends the credentials to the topograph service on each topology fetch.

      • If the administrator sets the value of Pass cloud credentials to no in BCM, then the profile of the EC2 instance where topograph runs has an IAM role with the AmazonEC2ReadOnlyAccess policy enabled. AWS EC2 instances support an IMDS API that provides metadata related to the instance itself. One of the features of this API is the support of a profile role for an instance.

  • For OCI clouds the nodes must exist in OCI, and

    • the administrator can set the value of Pass cloud credentials to yes

    or

    • the administrator can set the value of Pass cloud credentials to no and specify some named dynamic group (https://docs.oracle.com/en-us/iaas/Content/Identity/Tasks/managingdynamicgroups.htm) policies in the tenancy.

      Each named dynamic group must have permissions to inspect certain resources. Additionally, the special BCM thebcmnonprod-topo-dg dynamic group must have various permissions set to use a variety of resources. The permissions can be set according to the OCI policy syntax (https://docs.oracle.com/en-us/iaas/Content/Identity/Tasks/callingservicesfrominstances.htm#Writing) as follows:

      Allow dynamic-group <dynamic_group_name> to inspect compute-capacity-topologies in tenancy
      Allow dynamic-group <dynamic_group_name> to inspect compute-bare-metal-hosts in tenancy
      Allow dynamic-group <dynamic_group_name> to inspect compute-hpc-islands in tenancy
      Allow dynamic-group <dynamic_group_name> to inspect compute-network-blocks in tenancy
      Allow dynamic-group <dynamic_group_name> to inspect compute-local-blocks in tenancy
  • For GCP clouds the requirement is that the placement policy for VMs should be compact.

After the Topograph package is installed, the service started, and the administrator has met the requirements for the cloud topology API, then the topologyplugin and topologysource values must be set:

Example

[basecm11]% wlm use slurm
[basecm11->wlm[slurm]]% topologysettings
[basecm11->wlm[slurm]->topologysettings]% set topologyplugin tree
[basecm11->wlm[slurm]->topologysettings*]% set topologysource topograph
[basecm11->wlm[slurm]->topologysettings*]% commit

If topologysource is set to a value of none, then topology.conf content is not updated by BCM. Setting a value of topograph causes the Slurm topology to be fetched from the topograph service. The topograph service currently supports only the tree and block plugins.

Two additional cmsh commands allow testing:

  • The topology update command starts a topology update in the background.

  • The topology print command prints the generated content for Slurm topology.conf to STDOUT. This is a synchronous operation, which means that it can freeze for 10-15 seconds when Topograph is in use.

Example

[root@basecm11 ~]# cmsh
[basecm11]% wlm use slurm
[basecm11->wlm[slurm]]% topology update
Topology update initiated
[basecm11->wlm[slurm]]% topology print
SwitchName=nn-468b60a0020d2b170 Switches=nn-7a2f7858c1f7d5cd1
SwitchName=nn-7a2f7858c1f7d5cd1 Switches=nn-73d157eb3d683970e,nn-400810bf9f5e465d6
SwitchName=nn-400810bf9f5e465d6 Nodes=cnode001
SwitchName=nn-73d157eb3d683970e Nodes=cnode002

The topograph service logs can be seen with the systemd command: journalctl -u topograph -f

Prometheus exporter sampling

of the topograph service can be configured in CMDaemon. The topograph service sends out Prometheus metrics, which can be added to BCM as follows:

Example

[root@basecm11 ~]# cmsh
[basecm11]% monitoring setup
[basecm11->monitoring->setup]% add prometheus topograph
[basecm11->monitoring->setup*[topograph*]]% set urls https://localhost:49021/metrics
[basecm11->monitoring->setup*[topograph*]]% set -e NoPostAllowed yes
[basecm11->monitoring->setup*[topograph*]]% set https yes
[basecm11->monitoring->setup*[topograph*]]% set cacertificatepath /etc/topograph/ssl/ca-cert.pem
[basecm11->monitoring->setup*[topograph*]]% set privatekeypath /etc/topograph/ssl/server-key.pem
[basecm11->monitoring->setup*[topograph*]]% set certificatepath /etc/topograph/ssl/server-cert.pem
[basecm11->monitoring->setup*[topograph*]]% nodeexecutionfilters
[basecm11->monitoring->setup*[topograph*]->nodeexecutionfilters]% active
Added active resource filter
[basecm11->monitoring->setup*[topograph*]->nodeexecutionfilters]% commit

If, in the following session, the number of measurables is not zero, then it is a confirmation that the metrics are consumed by BCM:

Example

[root@basecm11 ~]# cmsh
[basecm11]% monitoring setup
[basecm11->monitoring->setup]% use topograph
[basecm11->monitoring->setup[topograph]]% show | grep measurables -i
Measurables 26:comma-separated list of measurables

Slurm drain reason policy: CMDaemon allows nodes to be drained:

  • either by user request, using the drain command (section 7.7.4) or

  • automatically, when a monitoring trigger (section 10.4.5) is configured. For example, if some healthcheck fails, then the appropriate node can be drained automatically.

The administrator can also manually drain a node outside of cmsh, using the Slurm scontrol command from the terminal, as described in man scontrol.1.

In all these cases the drain reason can be specified. By default, if a node is already drained, then a second drain command with a new drain reason replaces the old drain reason.

The behavior can be configured with the parameter Drain reason policy, within the Slurm cluster settings. The Drain reason policy can take one of the following (case-insensitive) values:

  • REPLACE: the old drain reason(s) is replaced by a new one

  • APPEND: the new drain reason is separated by a comma, and appended to the existing one(s).

  • SKIP:

    • If a drain reason already exists, then setting the new drain reason is skipped.

    • If no drain reason already exists, then the new drain reason is applied.

In the following example, the drain reason policy is set to APPEND. This means that CMDaemon always appends a new drain reason to any existing ones.

Example

[root@basecm11 ~]# cmsh
[basecm11]% wlm use slurm
[basecm11->wlm[slurm]]% set drainreasonpolicy APPEND
[basecm11->wlm[slurm*]]% commit

It is also possible to temporarily set an append policy in cmsh when draining a node, by using the + operator as a prefix to the drain reason:

Example

[root@basecm11 ~]# cmsh
[basecm11]% device use node001
[basecm11->device[node001]]% drain --reason="+this will be appended regardless of the current policy"

Slurm services restart or reconfiguration conditions:

  • When parameters in the Slurm configuration files are changed by BCM using CMDaemon, typically by actions of cmsh or Base View, then Slurm services automatically restart, and scontrol reconfigure is automatically run, as required.

  • When parameters in the Slurm configuration files are changed directly, then BCM does not detect a change automatically, and therefore does not automatically restart or reconfigure Slurm.

Slurm subsystems are restarted and reconfigured based on the following list of conditions:

  • slurmctld and slurmd are restarted if:

    1. any of the following global slurm.conf parameters managed by CMDaemon are changed:

      • SelectType

      • SelectTypeParameters

      • GresTypes

      • StateSaveLocation

      • SchedulerType

      • SchedulerParameters

      • SlurmctldParameters

    2. gres.conf is changed (by CMDaemon)

    3. oci.conf (https://slurm.schedmd.com/oci.conf.html) is changed (by CMDaemon). In cmsh this typically happens using the ocisettings submode under the wlm mode.

    4. nodes are changed (by CMDaemon) in slurm.conf (nodes are renamed, added, or removed).

  • An scontrol reconfigure is carried out if:

    1. any Slurm parameters managed by BCM, that are not mentioned in the preceding list of conditions, are changed. This is true also for the Partition and Node parameters within the slurm.conf file, except for the NodeName and PartitionName parameters specifically.

    2. cgroups.conf is changed (by CMDaemon)

    3. topology.conf is changed (by CMDaemon)

A restart or a reconfigure is not done by CMDaemon under other conditions.

Slurm resource consumption monitoring configuration: Slurm allows the configuration of how consumable resources (core, CPU, memory, etc) are tracked and shared among jobs on a node. At the time of writing of this section (November 2022), cmsh or Base View can be used to configure the tracking and sharing of resources as in the following text.

  • SelectType: this plugin configures the algorithm used to select resources for jobs. By default, NVIDIA Base Command Manager configures the select/cons_tres plugin. This is an advanced version of select/cons_res plugin, and it also allows GPUs to be tracked separately from other consumable resources.

    Further details on cons_res can be found in the Slurm documentation at https://slurm.schedmd.com/cons_res.html and https://slurm.schedmd.com/cons_res_share.html.

    The SelectType parameter is configured in cmsh or Base View, from within the Slurm cluster configuration settings:

    Example

    [root@basecm11 ~]# cmsh
    [basecm11]% wlm use slurm
    [basecm11->wlm[slurm]]% set selecttype select{<TAB><TAB>}
    select/cons_res select/cons_tres select/linear
    [basecm11->wlm[slurm]]%
  • SelectTypeParameters: allows the configuration of the resource selection plugin that is specified for the SelectType parameter. The possible values depend on the plugin type. For select/cons_tres, the values follow the pattern:

    • CR_Memory or

    • CR_ <COMPUTE_UNIT>[_Memory] where <COMPUTE_UNIT> takes one of the following values:

      • Core

      • CPU

      • Socket

      • Board

    The value of SelectTypeParameters specifies if the <COMPUTE_UNIT> resource is tracked, or if the <COMPUTE_UNIT> resource is tracked together with memory, or if only memory is tracked.

    There are also a few special values that can be applied to SelectTypeParameters:

    • CR_ONE_TASK_PER_CORE: allocate one task per core (used only with the select/linear plugin)

    • CR_CORE_DEFAULT_DIST_BLOCK: allocate cores within a node using a block distribution

    • CR_LLN: schedule resources to jobs on the least loaded nodes

    • CR_Pack_Nodes: if a job allocation contains more resources than will be used for launching tasks, then rather than distributing a job’s tasks evenly across its allocated nodes, pack them as tightly as possible on these nodes.

  • OverSubscribe (here):

    • if the select/linear plugin is used, then the OverSubscribe parameter controls whether or not the nodes are shared among jobs

    • if the select/cons_res or select/cons_tres plugins are used, then the OverSubscribe parameter controls whether or not the configured consumable resources are shared among jobs. For these plugins, when a consumable resource such as a core, socket, CPU, or other, is shared, it means that more than one job can be assigned to it. The parameter is set per Slurm partition (queue) and accepts the following values:

      • EXCLUSIVE: allocate entire node for a job;

      • FORCE: makes all resources (except for GRES) in the Slurm partition available for oversubscription without any means for users to disable it (may be followed with a colon and maximum number of jobs in running or suspended state);

      • YES: makes all resources (except for GRES) in the Slurm partition available for sharing upon request by the job (may be followed with a colon and maximum number of jobs in running or suspended state);

      • NO: no resource is allocated to more than one job.

  • AccountingStorageTRES: A comma-separated list of resources that the administrator wants to track on the cluster. By default the following resources (TRES) are tracked:

    • billing

    • CPU

    • energy

    • memory

    • node

    • fs/disk

    • pages

    • vmem

    These default TRES cannot be disabled, but only appended to. Resources use is recorded when used on the cluster. If GPUs of different types are tracked, then job requests with matching type specifications are recorded.

    Example

    If:
    AccountingStorageTRES=gres/gpu:tesla,gres/gpu:volta is set
    then:
    gres/gpu:tesla and gres/gpu:volta track only jobs that explicitly request those two GPU types.

Slurm REST API: slurmrestd is Slurm’s REST API daemon. It is installed with the BCM package slurm25.05-slurmrestd, or slurm25.11-slurmrestd. The distribution package, slurm-slurmrestd, should not be installed, and indeed its installation is not suggested by the package manager in a cluster that is correctly configured.

Slurm REST API package installation and version matching: If installing the REST API package, then care must be taken to match the versions exactly to its sibling Slurm packages (here). For example, if the already-installed packages have version 25.05:

Example

[root@basecm11 ~]# rpm -qa slurm* #what are the already installed packages?
slurm25.05-25.05.8-101124_cm11.0_0639470153.x86_64
slurm25.05-perlapi-25.05.8-101124_cm11.0_0639470153.x86_64
slurm25.05-slurmdbd-25.05.8-101124_cm11.0_0639470153.x86_64
slurm25.05-slurmd-25.05.8-101124_cm11.0_0639470153.x86_64
slurm25.05-slurmctld-25.05.8-101124_cm11.0_0639470153.x86_64
slurm25.05-contribs-25.05.8-101124_cm11.0_0639470153.x86_64
slurm25.05-devel-25.05.8-101124_cm11.0_0639470153.x86_64
slurm25.05-prs-25.05.8-101124_cm11.0_0639470153.x86_64

and if the Slurm REST API package version to be installed is as indicated by the following:

Example

root@basecm11 ~]# yum info slurm25.05-slurmrestd | egrep '(Name|Release|Source)' #what will install?
Name : slurm25.05-slurmrestd
Release : 102530_cm11.0_f08198ecda
Source : slurm25.05-25.05.9-102530_cm11.0_f08198ecda.src.rpm

then it means that all already-installed Slurm packages must be upgraded to release 102530_cm11.0_f08198ecda too.

The reason behind matching versions exactly is that the upstream versions can have significant configuration changes between patch versions (here 25.05.8 changing to 25.05.9). These changes may result in a non-functioning workload manager. This is true, not only when considering the Slurm REST API package, but also true when considering the other Slurm packages.

The user daemon cannot be in the bin group for slurm25.05-slurmrestd on SLES15: Slurm 25.05 expects that the user daemon should be a member of only the group daemon. The groups command lists the groups that a user is in, so it can be used to check to see if the user daemon is in the group bin as well in the group daemon with:

Example

[root@basecm11 ~]# groups daemon
daemon : daemon bin

Here the user daemon is in the group bin and as well as in the group daemon. For slurmrestd to work properly, the group bin must have user daemon deleted from it. The gpasswd command can do that with:

Example

[root@basecm11 ~]# gpasswd -d daemon bin

If slurmrestd is running on a compute node, then the gpasswd command must be run in the image of the compute node instead. For example, if the image is default-image:

Example

[root@basecm11 ~]# cm-chroot-sw-img /cm/images/default-image gpasswd -d daemon bin

The imageupdate command can then be run so that the change is picked up by the node.

The gpasswd command should be run for any group, other than group daemon, that user daemon is a member of.

Slurm REST API and authentication: The slurmrestd service can be configured with JWT (JSON Web Token) authentication as follows:

  1. The JWT key is generated in the Slurm cluster configuration directory, and its ownership and permissions are then changed:

    Example

    [root@basecm11 ~]# module load slurm # Loads SLURM_CONF environment variable from modulefile
    [root@basecm11 ~]# JWT_KEY=`dirname $SLURM_CONF`/jwt.key
    [root@basecm11 ~]# install -m 0600 -o slurm -g slurm <(dd if=/dev/random bs=32 count=1) $JWT_KEY

    The location of the key can differ, but user slurm must have read access to the file.

  2. The JWT plugin is configured in slurm.conf for the Slurm cluster instance. For example, for a Slurm cluster instance <cluster name>:

    Example

    AuthAltTypes=auth/jwt
    AuthAltParameters=jwt_key=/cm/shared/apps/slurm/etc/<cluster name>/jwt.key

    The slurmctld service is restarted to apply the plugin settings. For example, if it is running on the head node:

    [root@basecm11 ~]# systemctl restart slurmctld.service
  3. A systemd drop-in file is created for the new slurmrestd service:

    Example

    [root@basecm11 ~]# slurmrestapidir="/etc/systemd/system/slurmrestd.service.d"
    [root@basecm11 ~]# mkdir $slurmrestapidir
    [root@basecm11 ~]# echo "[Service]" > $slurmrestapidir/99-cmd.conf
    [root@basecm11 ~]# echo "Environment=SLURM_CONF=$SLURM_CONF" >> $slurmrestapidir/99-cmd.conf

    Future versions of BCM may automatically create or update the file 99-cmd.conf. It is therefore recommended to use that file name as a best practice for cluster administration.

  4. The slurmrestd service is configured within cmsh so that it can be monitored by BCM:

    Example

    [root@basecm11 ~]# cmsh
    [basecm11]% device services master
    [basecm11->device[basecm11]->services]% add slurmrestd
    [basecm11->device*[basecm11*]->services*[slurmrestd*]]% set monitored yes
    [basecm11->device*[basecm11*]->services*[slurmrestd*]]% set autostart yes
    [basecm11->device*[basecm11*]->services*[slurmrestd*]]% commit
    [basecm11->device[basecm11]->services[slurmrestd]]%.
  5. A ping-like curl check can be run with custom extra headers to ensure that the Slurm REST API service is running properly, as follows:

    Example

    [root@basecm11 ~]# export $(scontrol token username=cmsupport)
    [root@basecm11 ~]# curl 0.0.0.0:6820/openapi \
    -H "X-SLURM-USER-TOKEN: $SLURM_JWT" \
    -H "X-SLURM-USER-NAME: cmsupport"
    % Total % Received % Xferd Average Speed Time Time Time Current
    Dload Upload Total Spent Left Speed
    0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
    {
    "tags": [
    {
    "name": "slurm",
    "description": "methods that query slurmdbd"
    },
    {
    "name": "openapi",
    "description": "methods that query for OpenAPI specifications"
    }
    [...]

The slurmrestd daemon configuration is specified by its command line arguments. These can be made permanent in /etc/sysconfig/slurmrestd.

GPU autodetection:

Slurm supports GPU autodetection from version 20 onward, using the AutoDetect flag in gres.conf.

Slurm GPU autodetection allows AMD, Intel, and NVIDIA GPUs to have their GPU parameters be set automatically, if autodetection is also enabled in gres.conf. Slurm GPU autodetection removes the need for explicit GPU configuration in gres.conf.

The number of GPUs must however still be specified explicitly by the administrator. This is because at the time of writing (October 2024) Slurm has no GPU autodetection by default.

In BCM, the Slurm GPU hardware detection setting has 7 options, as covered here.

  • Setting the bcm option for Slurm GPU autodetection removes the need to specify any further GPU autodetect option.

  • Setting a GPU vendor (NVIDIA, Intel, AMD) option for Slurm GPU autodetection means that the Gres=... parameter in NodeName lines in slurm.conf is still required in order to tell slurmctld how many GRES to expect. This means that the administrator must define GPUs in BCM, in the genericresources mode of the slurmclient role, if that has not already been specified during cm-wlm-setup.

    However there is no need in this case to specify all the details. It is enough to add a single generic resource named gpu, and to specify the number of such GPUs. In order to skip adding the generic resources to gres.conf, while still allowing GRES information to be added the slurm.conf file, the flag AddToGresConfig should be set to no in the genericresource entity. For example:

    Example

    [basecm11]% configurationoverlay use slurm-client
    [basecm11->configurationoverlay[slurm-client]]% roles
    [basecm11->configurationoverlay[slurm-client]->roles]% use slurmclient
    [...[slurmclient]]% genericresources
    [...[slurmclient]->genericresources]% add autodetected-gpus
    [...[slurmclient*]->genericresources*[autodetected-gpus*]]% set name gpu
    [...[slurmclient*]->genericresources*[autodetected-gpus*]]% set count 8
    [...[slurmclient*]->genericresources*[autodetected-gpus*]]% set addtogresconfig no
    [...[slurmclient*]->genericresources*[autodetected-gpus*]]% commit
    [...[slurmclient]->genericresources[autodetected-gpus]]% wlm use slurm
    [basecm11->wlm[slurm]]% set gpuautodetect nvml
    [basecm11->wlm*[slurm*]]% commit
    [basecm11->wlm[slurm]]%

Initial generic resources configuration for Slurm GPU autodetection can also be done during Slurm setup by cm-wlm-setup. If GPU configuration is chosen in the TUI screen of cm-wlm-setup (figure 7.27):

The screen prompting for GPU configuration in cm-wlm-setup

Figure 7.27: The screen prompting for GPU configuration in cm-wlm-setup

then the TUI allows Slurm GPU autodetection options to be selected (figure 7.28):

The GPU configuration screen of cm-wlm-setup

Figure 7.28: The GPU configuration screen of cm-wlm-setup

The options are the same as those described in the list of 7 options for GPU auto detect (here). The options result in the following actions:

  • BCM autodetects GPUs: BCM automatically detects numbers and types of GPUs on the selected nodes and configures slurm.conf appropriately. The administrator is not asked to configure anything. This option does not work if the nodes have GPUs from a mix of vendors.

  • Slurm autodetects <vendor> GPU details: the administrator is prompted to specify numbers and types of GPUs later on. These values are then added to the Gres parameter of NodeName lines in slurm.conf, while Slurm autodetects the rest of the GPU details.

  • Manual GPU configuration in cm-wlm-setup: the administrator is prompted to enter the GPU parameters manually. The manual entries are then converted to appropriate lines in gres.conf.

Slurm GPU cluster settings: When a GPU is configured the following parameters can be configured with BCM:

Base ViewSlurm Object Value WithinDescription
OptionWLM Mode Of cmsh
Select TypeSelectTypeIdentifies the type of resource selection algorithm to be used. Changing this value causes the slurmctld daemon to be restarted. Default: Consumable trackable resource:select/cons_tres
Select Type ParametersSelectTypeParametersParameters for the resource selection algorithm. Acceptable values for these parameters depend upon the algorithm selected. Default: Core as a consumable resource: CR_Core
Accounting Storage TRESAccountingStorageTRESComma-separated list of resources to be tracked on the cluster, requested by an sbatch/srun job on submission. Default: GPU as a generic resource: gres/gpu

Example

[basecm11->wlm[slurm]]% get selecttype
select/cons_tres

MIG and Slurm: NVIDIA’s Multi-Instance GPU (MIG) technology is a way to optimize GPU use. MIG allows a single GPU to be partitioned into up to 7 separate logical GPU instances, each providing separate GPU resources to user jobs. Slurm is MIG-capable since version 21.08.

BCM automates the configuration of MIG profiles as GPU generic resource types. This means that a user can request GPUs by type, and Slurm then tracks the MIG profiles usage.

MIG detection on Slurm compute nodes (nodes with the slurmclient role assigned) means that the slurm.conf and gres.conf files are automatically configured by CMDaemon as follows:

  • slurm.conf:

    1. For each node, NodeName parameter lines have a Gres specification (generic resource type specification) with the MIG profile names appended as strings. The strings take the format: gpu: <profile>:<number>

      where <number> is the number of instances with the profile name of gpu: <profile>. For example:

      1. A GPU on node001 is partitioned into two MIG instances, one with a profile name of 3g.40gb, and the other with a profile name of 4g.40gb:

        Example

        NodeName=node001 ... Gres=gpu:3g.40gb:1,gpu:4g.40gb:1 ...
      2. A GPU on node001 is partitioned into two MIG instances, both with same profile name 3g.20gb. Also present is a regular GPU, a40, that is configured manually as a generic resource:

        Example

        NodeName=node001 ... Gres=gpu:a40:1,gpu:3g.20gb:2 ...
    2. The GresTypes parameter line has the MIG profiles from all the compute nodes.

      Example

      GresTypes=3g.40gb,4g.40gb,gpu
    3. The AccountingStorageTRES parameter line includes the new generic resource per MIG profile.

      Example

      AccountingStorageTRES=gres/gpu,gres/gpu:3g.40gb,gres/gpu:4g.40gb
  • gres.conf: the AutoDetect parameter is set to NVML for the nodes where MIGs are detected.

    Example

    NodeName=node[001-016] AutoDetect=NVML

    In this case Slurm detects the MIG details (links, file, cores, and so on) automatically.

If the GPUs are repartitioned by BCM, then the Slurm configuration is by default automatically updated with the new GPU types according to the new MIG profiles. The default value of yes can be modified with the configuremigs parameter in Slurm cluster settings:

Example

[basecm11->wlm[slurm]]% set configuremigs no; commit

The administrator can validate that the MIG devices are correctly recognized by Slurm, by checking the Gres line output of the scontrol show node command:

Example

[root@basecm11 ~]# scontrol show node node001 | grep "Gres="
Gres=gpu:4g.40gb:1(S:0),gpu:3g.40gb:1(S:0)

The presence of a socket value such as S:0 indicates that Slurm detected the MIG details on the node as expected.

Slurm node settings:

The parameter value for a Slurm option in slurm.conf is set by CMDaemon, if its value is not: 0.

A parameter value of 0 means that the default values of Slurm are used. These usually have the value: 0.

The advanced options that CMDaemon manages for Slurm are:

Base View OptionSlurm OptionDescription
FeaturesFeature=<string> entry in the file slurm.confArbitrary strings can be entered to indicate some characteristics of a node, one string per entry. For example: text1 text2 and so on. These become part of the: Feature=text1,text2... attribute to the NodeName=<node name> entry line in slurm.conf, as indicated in man slurm.conf.5. The strings also become added attributes to the GresTypes entry of that file. Default: blank.
File=<device> entries in the file gres.confThis is only implemented if the number of GPUs has been set by the administrator using BCM, by setting the basic Slurm client option GPUs. The GPUs option is seen, for example, in Base View, using the navigation path Grouping > Node categories[default] > Edit > SettingsRoles >
slurmclient > GPUs. Each device detected on the host node can be added as an entry. For example: /dev/nvidia0 /dev/nvidia1 and so on. Alternatively, they can be added as a range in one line, for example: /dev/nvidia[0-1] These become part of the: Name=gpu File=<device> lines in gres.conf, as indicated in man gres.conf.5. Default: blank
CPUNumber of logical processors on the node. For Slurm 20 and beyond, CMDaemon detects the number of CPU cores, and sets procs=number of cores using slots autodetection. Default for Slurm prior to version 20: 0
SocketsSocketsProcessor chips on node. If this is defined, then SocketsPerBoard must not be defined. Default: 0
Cores per socketCoresPerSocketNumber of cores per socket. Default: 0
ThreadsPerCoreThreadsPerCoreNumber of logical threads for a single core. Default: 0
BoardsBoardsNumber of baseboards in a node. Default: 0
SocketsPerBoardSocketsPerBoardNumber of processor chips on baseboard. If this is defined, then Sockets must not be defined. Default: 0
RealMemoryRealMemorySize of real memory on the node, MB. Default: 0
NodeHostnameNodeHostnameDefault: as defined by Slurm’s NodeName parameter.
NodeAddrNodeAddrDefault: as set by Slurm’s NodeHostname parameter.
StateStateState of the node with user jobs. Possible Slurm values are: DOWN, DRAIN, FAIL, FAILING, and UNKNOWN. Default: UNKNOWN
WeightWeightThe priority of the node for scheduling. Default: 0
PortPortPort that slurmd listens to on the compute node. Default: as defined by SlurmdPort parameter. If SlurmdPort is not specified during build: Default: 6818.
TmpDiskTmpDiskTotal size of Slurm’s temporary filesystem, TmpFS, typically /tmp, in MB. TmpFS is the storage location available to user jobs for temporary storage. Default: 0
Optionsextra optionsExtra options that are added to slurm.conf

Further Slurm documentation is available:

  • in man pages under /cm/local/apps/slurm/current/man/

  • as HTML documentation in the version dependent directory of the form:

    /cm/local/apps/slurm/current/share/doc/slurm- <version>/html, or

  • at the Slurm website at http://slurm.schedmd.com/documentation.html

Slurm is set up with reasonable defaults, but administrators familiar with Slurm can reconfigure the configuration file using a web browser. The web browser can be used with the HTML documentation of the installed Slurm version, in the version dependent directory of the form:

/cm/local/apps/slurm/current/share/doc/slurm- <version>/html/

The choice of JavaScript-based configuration generators is then:

  • configurator.easy.html: for a simplified configurator

  • configurator.html: for a full version of the configurator.

If the configuration file becomes mangled beyond repair, the original default can be regenerated once again by re-installing the Slurm package, then running the script /cm/local/apps/slurm/current/scripts/cm-restore-db-password, and then running cm-wlm-setup. Care must be taken to avoid duplicate parameters being set in the configuration file—slurmd may not function correctly in such a configuration.

7.5.1.9 Running Slurm

Slurm can be disabled and re-initialized with the cm-wlm-setup tool (section 7.3) during package installation itself.

Alternatively, role assignment and role removal can be used to adjust what nodes, if any, run Slurm. The assignment and removal of roles can be carried out from Base View (section 7.4.1) or cmsh (section 7.4.2).

The Slurm workload manager runs these daemons:

  1. as servers:

    1. slurmdbd: The database that tracks job accounting. It is part of the slurmdbd service.

    2. slurmctld: The controller daemon. Monitors Slurm processes, accepts jobs, and assigns resources. It is part of the slurm service.

    3. munged: The authentication (client-and-server) daemon. It is part of the munge service.

  2. as clients:

    1. slurmd: The compute node daemon that monitors and handles tasks allocated by slurmctld to the node. It is part of the slurm service.

    2. slurmstepd: A temporary process spawned by the slurmd compute node daemon to handle Slurm job steps. It is not initiated directly by users or administrators.

    3. munged: The authentication (client-and-server) daemon. It is part of the munge service.

Logs for the daemons are saved on the node that they run on. Accordingly, the locations are:

  • /var/log/slurmdbd

  • /var/log/slurmd

  • /var/log/slurmctld

  • /var/log/munge/munged.log

7.5.2 Installing, Configuring, And Running LSF

IBM prefers to make LSF available directly from their Passport Advantage Online website, which is why it is not available by direct selection in figure 3.9 of the Installation Manual.

IBM provides LSF in 2 ways.

Somewhat confusingly, the archived IBM Spectrum LSF Suite version 10.2.0.9 has LSF Standard edition 10.1 as a component. The component is supported, but installation from the suite is not supported by BCM. That is, installation using the official IBM method or by carrying out a manual installation are both not supported by BCM. A cluster administrator should therefore not try to install LSF Standard Edition 10.1 from a IBM Spectrum LSF Suite release.

7.5.2.1 Installing LSF

The workload manager LSF version 10.1 is installed and integrated into NVIDIA Base Command Manager 11 with the following steps:

  1. The following LSF files should be downloaded from the IBM web site into a directory on the head node:

    • Installation package: lsf <lsf_ver>_lsfinstall_linux_<cpu_arch>.tar.Z

    • Distribution package: lsf <lsf_ver>_linux<kern_ver>-glibc <glibc_ver>-<cpu_arch>.tar.Z

    • Documentation package (optional): lsf <lsf_ver>_documentation.tar.Z

    Here:

    • <lsf_ver> is the LSF version, for example: 10.1

    • <kern_ver> is the Linux kernel version, for example: 2.6

    • <glibc_ver> is the glibc library version, for example: 2.3

    • <cpu_arch> is the CPU architecture, for example: x86_64

    A check should be done to ensure that the tar.Z files have not been renamed or had their names changed to lower case during the download, in order to avoid installation issues. All the files must be in the same directory before installation.

    In case of an existing failover setup, the installation is done on the active head node.

    A license file for LSF may also be needed for the installation, but it does not have to be in the same directory as the other tar.Z files.

  2. The cm-lsf package must be installed on the head node. The cm-lsf-client package must be installed on both the head node and within the software images. By default they should have been already installed. If not then they can be installed manually from the BCM repository. For RHEL-based distributions the procedure looks like:

    [root@basecm11 ~]# yum install cm-lsf cm-lsf-client
    [root@basecm11 ~]# chroot <IMAGE> yum install cm-lsf-client

    For SLES distributions the procedure looks like:

    [root@basecm11 ~]# zypper install cm-lsf cm-lsf-client
    [root@basecm11 ~]# chroot <IMAGE> zypper install cm-lsf-client

    For Ubuntu distributions the procedure looks like:

    [root@basecm11 ~]# apt-get install cm-lsf cm-lsf-client
    [root@basecm11 ~]# cm-chroot-sw-img <IMAGE>
    [root@basecm11 ~]# apt-get install cm-lsf-client
    ...
    [root@basecm11 ~]# exit

    The cm-lsf and cm-lsf-client packages contain a template for an environment module file, an installation configuration file, and systemd unit files. The installation configuration file may be tuned by the administrator if required. It is passed to the lsfinstall script distributed with LSF, which is executed by cm-wlm-setup during setup. To change the default values in the installation configuration file, the administrator should change the template file:

    [root@basecm11 ~]# cd /cm/shared/apps/lsf/var/cm/
    [root@basecm11 cm]# vi install.config.template
    ...

    Values enclosed by a percentage sign, ‘%’, are replaced by cm-wlm-setup during installation. If such values are replaced by custom values, then cm-wlm-setup does not change them, and the custom values are used during installation.

    If install.config is changed instead of the template file, then cm-wlm-setup replaces it with the configuration file generated from the template. So, changing install.config directly should almost certainly not ever be done.

  3. cm-wlm-setup is run. The directory where the LSF files were downloaded is specified on one of the setup screens, or with the --archives-location option.

    Example

    [root@basecm11 ~]# cm-wlm-setup --wlm lsf --setup --archives-location /root/lsf

    The same can be achieved by executing cm-wlm-setup without any command line arguments. The required information can be specified within the TUI configuration screens in this case. Also the same can be achieved with the WLM Wizard in Base View.

  4. The nodes are then rebooted, and the LSF command bhosts then displays an output similar to:

    Example

    [root@basecm11 ~]# module load lsf
    [root@basecm11 ~]# bhosts
    HOST_NAME STATUS JL/U MAX NJOBS RUN SSUSP ...
    basecm11 ok - 2 0 0 0 ...
    head2 ok - 0 0 0 0 ...
    node001 ok - 1 0 0 0 ...
    node002 ok - 1 0 0 0 ...
    node003 unavail - 1 0 0 0 ...
    node004 closed - 1 0 0 0 ...
    node005 ok - 1 0 0 0 ...

    The output in the preceding example has been truncated for this manual, for convenience.

    The installation status can be checked with the service lsfd (some output elided):

    [root@basecm11 ~]# systemctl status lsfd
    lsfd.service - IBM Spectrum LSF
    Loaded: loaded (/usr/lib/systemd/system/lsfd.service; enabled; vendor preset: disabled)
    Active: active (running) since Sat 2023-01-14 17:48:05 CET; 1 day 15h ago
    Process: 54334 ExecStart=/cm/shared/apps/lsf/current/etc/lsf_daemons start (code=exited, status=0/SUCCESS)
    Tasks: 13 (limit: 23269)
    Memory: 179.5M
    CGroup: /system.slice/lsfd.service
    |- 54410 /cm/shared/apps/lsf/...10.1/linux2.6-glibc2.3-x86_64/etc/res
    |- 54412 /cm/shared/apps/lsf/...10.1/linux2.6-glibc2.3-x86_64/etc/sbatchd
    |- 54427 /cm/shared/apps/lsf/...10.1/linux2.6-glibc2.3-x86_64/etc/mbatchd -d
    /cm/shared/apps/l...
    |-102312 /cm/shared/apps/lsf/...10.1/linux2.6-glibc2.3-x86_64/etc/eauth -s
    |-344591 /cm/shared/apps/lsf/...10.1/linux2.6-glibc2.3-x86_64/etc/lim -d
    | /cm/shared/apps/l..
    |-344595 /cm/shared/apps/lsf/...10.1/linux2.6-glibc2.3-x86_64/etc/pim -d
    /cm/shared/apps/...
    |-344612 /cm/shared/apps/lsf/...10.1/linux2.6-glibc2.3-x86_64/etc/melim
    |-344647 /cm/shared/apps/lsf/...10.1_linux2.6-glibc2.3-x86_64/10.1...
    `-457629 /cm/shared/apps/lsf/...10.1_linux2.6-glibc2.3-x86_64/10.1/...
    Jan 14 23:29:30 basecm11 mbatchd[54427]: Jan 14 23:29:30 2023 54427:54427 3 10.1 ...
    ...
    [root@basecm11 ~]#

    while default queues can be seen by running:

    [root@basecm11 ~]# module load lsf
    [root@basecm11 ~]# bqueues
    QUEUE_NAME PRIO STATUS MAX JL/U JL/P ...
    owners 43 Open:Active - - - ...
    priority 43 Open:Active - - - ...
    night 40 Open:Active - - - ...
    chkpnt_rerun_qu 40 Open:Active - - - ...
    short 35 Open:Active - - - ...
    license 33 Open:Active - - - ...
    normal 30 Open:Active - - - ...
    interactive 30 Open:Active - - - ...
    idle 20 Open:Active - - - ...

    The output in the preceding example has been truncated for this manual, for convenience.

    If more than one instance of an LSF cluster is set up, then the full modulefile name should be specified. For example:

    [root@basecm11 ~]# module load lsf/lsf1/10.1

7.5.2.2 Configuring LSF

LSF server configuration: After LSF is set up with cm-wlm-setup, the following CMDaemon settings can be modified for the LSF server role:

  • External Server: a value of yes means that LSF server daemons are running on an external server that is not managed by BCM.

The following settings are available in LSF cluster settings, and are applied to all the LSF roles of the LSF cluster:

  • Prefix: this sets the path to the root location of the LSF installation. The default value is /cm/shared/apps/lsf/current.

  • Var: this sets the path to the var directory of LSF. The default value is /cm/shared/apps/lsf/var.

  • Cgroups: this is a submode that contains LSF-related cgroups settings.

The cgroups settings that affect LSF behavior are available using the LSF instance. For example, for an instance lsf, the settings can be accessed within cmsh using cmsh->wlm[lsf]->cgroups. The settings available are:

  • Automount: if yes, then the workload manager tries to mount a subsystem if it is not mounted yet. The default value is No.

  • Job Cgroup Template: this is the template relative job cgroup path. The token $CLUSTER specified in this template path is replaced with the actual LSF cluster name, and $JOBID is replaced by the job ID. The path is used by the BCM monitoring system in order collect job metrics from the cgroups. By default, the path is set to "lsf/$CLUSTER/job.$JOBID.*".

  • Process Tracking: if yes, then processes are tracked based on job control functions such as: termination, suspension, resume, and other signaling. These are used on Linux systems that support the freezer subsystem under cgroups. The parameter sets LSF_PROCESS_TRACKING in lsf.conf.

  • Linux Cgroup Accounting: if yes, then LSF tracks processes based on CPU and memory accounting. This is for Linux systems that support the memory and cpuacct subsystems under cgroups. Once enabled, this parameter takes effect for new jobs. The parameter sets LSF_LINUX_CGROUP_ACCT in lsf.conf.

    If this parameter and Process Tracking are both enabled, then they take precedence over the parameters LSF_PIM_LINUX_ENHANCE and EGO_PIM_SWAP_REPORT in lsf.conf.

  • Mount Point: specifies a path where cgroups is mounted. It only makes sense to set this when the location is not standard for the operating system.

  • Resource Enforce: If yes, then resource enforcement is carried out through the Linux memory and cpuset subsystems under cgroups. This is for Linux systems with cgroup support. The parameter sets LSB_RESOURCE_ENFORCE in lsf.conf.

The server role settings can be modified as follows:

  • Within Base View: For example for a head node basecm11, using a navigation path of Devices > All Devices > Head Node > Settings > Roles > + Add > LsfServerRole

  • Within cmsh: For a particular category in the category mode, or a particular device in the device mode, the roles submode is chosen. Within the roles submode, the lsfserver object can be assigned or used. The following example shows how to set the LSF prefix parameter for the default category.

    Example

    [root@basecm11~]# cmsh
    [basecm11]% configurationoverlay use lsf-server; roles
    [basecm11->configurationoverlay[lsf-server]->roles]% use lsfserver
    [basecm11->...[lsfserver]]% set externalserver yes
    [basecm11->...[lsfserver*]]% commit

The global LSF cluster settings can be modified as follows:

  • Within Base View:
    For example, for a head node basecm11, using a navigation path of:
    HPC > Workload Management Clusters > WLM (LSF) instance

  • Within cmsh:
    A particular LSF cluster instance can be chosen within wlm mode, to set its global parameters. The following example shows how to set the LSF prefix parameter for the lsf1 cluster.

    Example

    [root@basecm11~]# cmsh
    [basecm11]% wlm use lsf1
    [basecm11->wlm[lsf1]]% set prefix /cm/shared/apps/lsf2
    [basecm11->wlm*[lsf1*]]% commit

LSF client configuration: After installation, the following CMDaemon settings can be specified for the LSF client role:

  • **Queues ** In cmsh, queues can be added using jobqueue mode. In LSF, the default queue is normal. More arbitrarily-named queues can be specified with:

    Example

    [basecm11->wlm[lsf]->jobqueue]% add abnormal
    [basecm11->wlm[lsf]->jobqueue*[abnormal*]]% add subnormal
    [basecm11->wlm[lsf]->jobqueue*[subnormal*]]% add supernormal
    [basecm11->wlm[lsf]->jobqueue*[supernormal*]]% commit
    [basecm11->wlm[lsf]->jobqueue*[supernormal]]% ..
    [basecm11->wlm[lsf]->jobqueue*]% list
    Name (key) Nodes
    ------------ ------------------------
    abnormal
    normal node001..node005
    subnormal
    supernormal

    The jobqueue values can be set for the LSF client role:

    Example

    [basecm11->wlm[lsf]->jobqueue*]% configurationoverlay
    [basecm11->configurationoverlay]% use lsf-client
    [basecm11->configurationoverlay[lsf-client]]% roles
    [basecm11->...->roles]% use lsfclient
    [basecm11->...->roles[lsfclient]]% get queues
    normal
    [basecm11->...->roles[lsfclient]]% set queues abnormal subnormal supernormal normal
    [basecm11->...->roles*[lsfclient*]]% commit
    [basecm11->...->roles*[lsfclient*]]% show
    Parameter Value
    -------------------------------- ------------------------------------------------
    Name lsfclient
    Revision
    Type LSFClientRole
    Add services yes
    WLM cluster lsf
    Slots auto
    All Queues no
    Queues subnormal,supernormal,abnormal,normal
    Server yes
    Host Model
    Host Type LINUX
    GPUs 0
    Node Customizations <0 in submode>

    Alternatively, queues can be managed using Base View (section 7.6.2).

  • **Specifying nodes for job queues for LSF ** The administrator can specify the nodes that are associated with a job queue.

    • Prior to BCM version 11, job queues were specified for nodes only by using the queues parameter of the lsfclient role at the device, category, or configurationoverlay mode level.

      For example, for the configuration overlay lsf-client that defines the LSF client configuration by default, the nodes for the LSF client role are the nodes in the default category normal. Within the configuration overlay, within the lsfclient role, the default queue to be used is set to normal by default:

      Example

      root@basecm11:~# cmsh
      [basecm11]% configurationoverlay use lsf-client
      [basecm11->configurationoverlay[lsf-client]]% get categories
      default
      [basecm11->configurationoverlay[lsf-client]]% roles
      [basecm11->configurationoverlay[lsf-client]->roles]% use lsfclient
      [basecm11->configurationoverlay[lsf-client]->roles[lsfclient]]% get queues
      normal
    • Starting with BCM version 11, the administrator can also add nodes to queues directly from within wlm mode for a particular WLM, within the jobqueue mode for a particular queue, by setting nodes for particular node grouping parameters. For example, for LSF the following queue parameters are available:

      Example

      [basecm11->wlm[lsf]->jobqueue[normal]]% show | egrep -i '(overlay|nodegroups|compute|catego)'
      Overlays
      Categories
      Nodegroups
      Compute nodes

      Thus normal is used by nodes that have been specified in the following groupings:

      • Overlays: nodes in these configuration overlays (including nodes of categories that are in this overlay)

      • Categories: nodes in these categories

      • Nodegroups: nodes in these node groups

      • Compute nodes: nodes listed in this parameter

  • **Options ** A navigation path of: Devices > All Devices > node001 > Settings > Roles > + Add > LSFClientRole
    lets options be set for a regular node node001 (figure 7.29):

Base View access to LSF configuration options using roles window options

Figure 7.29: Base View access to LSF configuration options using roles window options

Available options are:

  • Slots: The number of CPUs per node. By default LSF tries to determine the value automatically with the auto setting. If the number of slots is set to 0, then the node becomes an LSF submit host, so that no jobs can run on the host, but users can submit their jobs from this host using the LSF utilities.

  • Queues: All queues can be set, or queues can be selected.

  • Server: Whether the node is an LSF server

  • Host Model, Host Type: Possible values for these are defined in lsf.shared

  • GPUs: The number of GPUs per node.

  • Node Customizations: LSF node custom properties (section 7.11).

From cmsh these properties are accessible from within the appropriate node or category roles submode (section 7.4.2.4).

Submission hosts: By default, all compute nodes to which the lsfclient role is assigned, also become submission hosts. This means that LSF users can submit their jobs from those compute nodes. If the administrator wants to allow users to submit their jobs from a non-compute node—for example from a login node—then the lsfsubmit role should be assigned, for example:

Example

[root@basecm11~]# cmsh
[...->configurationoverlay[lsf1-submit]]% roles
[...->roles]% assign lsfsubmit
[...->roles*[lsfsubmit*]]% append lsfclusters lsf1
[...->roles*[lsfsubmit*]]% commit
[...->roles[lsfsubmit]]%

Configuring a node according to the preceding steps then allows users to submit their jobs from that node, without the submitted jobs getting scheduled to run on that node.

If more than one LSF cluster is set up, and they share the same submit host, then a single lsfsubmit role can be used. In this case, all the LSF cluster names should be appended to the lsfcluster parameter of the role.

Further configuration: For further configuration the Administering Platform LSF manual provided with the LSF software should be consulted.

7.5.2.3 Running LSF

Role assignment and role removal enables and disables LSF from Base View (sections 7.4.1) or cmsh (section 7.4.2).

An active LSF master service (typically, but not necessarily on a head node) has the following LSF-related processes running on it:

Process/ServiceDescription
resRemote Execution Server*
sbatchdclient batch job execution daemon*
mbatchdmaster batch job execution daemon
eauthExternal Authentication method
limLoad Information Manager*
pimProcess Information Manager*
pemProcess Execution Manager*
vemkdPlatform LSF Kernel Daemon
egoscEnterprise Grid Orchestrator service controller
mbschdmaster batch scheduler daemon

*These services/processes run on compute nodes.

Non-active LSF-masters running as compute nodes run the processes marked with an asterisk only.

LSF daemon logs are kept under /cm/local/apps/lsf/var/log/, on each of the nodes where LSF services run.

7.6 Using Base View With Workload Management

Viewing the workload manager services from Base View is described in section 7.4.3. The HPC (High Performance Computing) icon, which looks like a speedometer, is the Base View resource that allows the following items to be accessed:

  • WLM clusters: for WLM cluster settings for a WLM cluster instance to be viewed and managed

  • jobs: for jobs to be viewed and managed

  • queues: for queues to be viewed and managed

  • job queue stats: for job queue statistics to be viewed

These items are described next.

7.6.1 Jobs Display And Handling In Base View

The navigation path HPC > Jobs opens up the Job list window. This displays a list of recent job IDs, along with the user, status, scheduler used, and queue (figure 7.30).

Workload manager job list window

Figure 7.30: Workload manager job list window

  • The ↗ in the Actions column opens up a screen that allows a particular job to be examined (figure 7.31):

Workload manager job subwindow

Figure 7.31: Workload manager job subwindow

  • The ⋮ in the Actions column allows a particular job to be managed (figure 7.32):

Workload manager job management window

Figure 7.32: Workload manager job management window

The menu options allow the selected job to be managed as follows:

  • The Hold option stops selected queued jobs from being considered for running by putting them in a Hold state (H in the Status column).

  • The Release option releases selected queued jobs in the Hold state so that they are considered for running again.

  • The Suspend option suspends selected running jobs (S in the Status column).

  • The Resume option allows selected suspended jobs to run again.

  • The Cancel option removes selected jobs from the queue.

7.6.2 Queues Display And Handling In Base View

The navigation path HPC > Workload Management Clusters > Job Queues displays a list of queues available (figure 7.33).

Workload manager queues

Figure 7.33: Workload manager queues

Queues can be added with the + Add option, or deleted with the ⋮ option. Opening a screen with the ↗ option allows queue parameters for an existing to be set, for example as in figure 7.34.

Workload manager queue parameters configuration

Figure 7.34: Workload manager queue parameters configuration

7.7 Using cmsh With Workload Management

The wlm mode in cmsh gives the administrator access to the WLM instances running on the cluster.

The cmsh tree (Appendix M) has the following submodes structure under the wlm mode:

`-- wlm
|-- accounting
|-- cgroups
|-- chargeback
|-- jobqueue
|-- jobs
|-- ocisettings
`-- placeholders
  • accounting: provides ways to set some advanced Slurm job accounting properties (here)

  • cgroups: provides ways to configure WLMs using the cgroup mechanism of the Linux kernel (section 7.10)

  • chargeback: provides ways to measure the costs of requested IT resources for WLM jobs (Chapter 13)

  • jobqueue: allows WLM job queues to be managed (section 7.7.3)

  • jobs: allows WLM jobs to be viewed and managed (section 7.7.2)

  • ocisettings: allows OCI settings (Chapter 2 of the Cloudbursting Manual) to be viewed and managed

  • placeholders: allows nodes to be configured in advance, for planning resource use in WLMs (section 8.4.8)

In addition to these submodes, wlm mode provides several commands at the entity level:

  • activeservers: displays the active WLM server nodes (section 7.7.1)

  • grid: shows a visual grid of historic job information (section 7.7.2.6)

  • filter: filters job information across WLM instances (here)

  • statistics: displays job statistics (here)

The monitoring commands healthoverview (here), samplenow (here), and monitoringactionhistory (here) are also available in wlm mode, and described in Chapter 10.

For basic WLM management using cmsh, the administrator is expected to use wlm mode with the jobs and jobqueue submodes.

If there is just one WLM instance running on the cluster, then an administrator that accesses wlm mode drops straight into the object representing that WLM instance, and can then access the submodes.

If there is more than one WLM running, then the administrator must select a WLM instance from the top level wlm mode, with the use command, in order to access the submodes.

While at the top level wlm mode, the instances can be listed. The list shows the nodes used by the instance, and the node roles assigned to the nodes.

Suppose BCM is being used to manage two WLM instances:

  • one Slurm WLM, named slr

  • one Slurm WLM, named uc

with their nodes having been allocated roles as follows:

Example

[basecm11->wlm]% list
Type Name (key) Server nodes Submit nodes Client nodes
------ ------------------------ ------------ ------------------------- ----------------
Slurm slr node001 basecm11,node001..node003 node002,node003
Slurm uc node004 basecm11,node004..node006 node005,node006

Then one way to list all jobs running per WLM instance, queue, and user, is with the filter command:

[basecm11->wlm]% filter --running
WLM Job ID Job name User Queue Submit time Start time End time Nodes Exit code
---- ------ --------- ----- ------ ----------- ------------ --------- ----------------- ----------
slr 103 sjob maud defq 15:43:02 15:43:03 N/A node002,node003 0
slr 104 sjob maud defq 15:43:02 15:43:25 N/A node002,node003 0
slr 105 sjob maud defq 15:43:02 15:43:33 N/A node002,node003 0
slr 106 sjob maud defq 15:43:02 15:43:36 N/A node002,node003 0
slr 171 sjob maud defq 14:20:09 14:20:23 N/A node002,node003 0
uc 200 sjob fred batch 14:22:18 14:23:20 N/A node005,node006 0

The filter command can also be run within the jobs mode, for a particular WLM instance, and is described in more detail here.

An alternate way to list all jobs from wlm mode is with a foreach command to descend into jobs submode to list the jobs for each WLM instance:

Example

[basecm11->wlm]% foreach * (jobs ; list)
Type Job ID User Queue Running time Status Nodes
----- ------- ----- ------ ------------ ---------- ----------------
Slurm 55 maud defq 18m 10s COMPLETED node002,node003
Slurm 56 maud defq 18m 5s COMPLETED node002,node003
Slurm 57 maud defq 2m 11s RUNNING node002,node003
Slurm 58 maud defq 0s PENDING
Type Job ID User Queue Running time Status Nodes
----- ------- ----- ------ ------------ ---------- ----------------
Slurm 96 maud batch 2m 30s RUNNING node005,node006
Slurm 97 maud batch 0s PENDING
Slurm 98 maud batch 0s PENDING

The jobs submode is now discussed further.

7.7.1 The activeservers Command

The activeservers command displays the nodes currently acting as active WLM servers. It helps a cluster administrator check which head or server node is actually handling the workload manager, particularly in high-availability configurations.

Example

[basecm11->wlm]% activeservers
slurm basecm11

The output shows the WLM instance name and the hostname of its active server node.

7.7.2 The jobs Submode In cmsh

Within the jobs submode of a WLM instance, the administrator can list jobs that are running or queued up for that particular instance. For example, the running and queued jobs listed for a Slurm instance may be displayed as:

Example

[basecm11->wlm[slurm]->jobs]% list
Type Job ID User Queue Running time Status Nodes
--------- ------------- ----------- ------------ ------------ -------- -------------
Slurm 3117 user1 hydroq 1s RUNNING node002
Slurm 3118 user2 workq 1s RUNNING node001
Slurm 3119 user1 hydroq 0s PENDING
Slurm 3120 user3 hydroq 0s PENDING
Slurm 3121 user1 hydroq 0s PENDING
Slurm 3122 user1 hydroq 0s PENDING

The number of jobs can be very large. The wait command in jobs mode can be used to provide a shorter running summary. The following wait command displays a running summary that regularly displays a tally of the running and pending jobs; waits for all of them to complete; and has the waiting-for-completion condition overruled by a timeout of 10 minutes:

Example

[basecm11->wlm[slurm]->jobs]% wait --timeout 10m --all
0s| running: 4, pending: 12
1m| running: 3, pending: 12
2m| running: 4, pending: 11
5m| running: 4, pending: 10
7m| running: 4, pending: 9
9m| running: 3, pending: 8
* timeout *

By default wait runs every minute until the specified timeout. Also, by default, as indicated by the missing 3rd and 4th minutes in the example, the outputs are only displayed with the tally changes. Further options to the wait command within jobs mode can be found in the help text display output when help wait is run.

In the foreach jobs listings for the two Slurm WLM instances shown earlier, the jobs are in a running, queued up, or completed state. They are also all being run by a user maud, who happens to be making use of both workload managers.

For Slurm, completed jobs are shown for a short time with the status COMPLETED.

7.7.2.1 Commands That Change The Status Of A Queued Or Running Job

Within a jobs submode, the following commands, used with a job ID, can change the status of a particular queued or running job:

  • hold: puts a queued job into a hold state. This prevents the job from being considered for running.

  • release: releases a job from a hold state, putting it back in the queue, so that it can be considered for running.

  • suspend: pauses a running job

  • resume: resumes a suspended job

  • remove: removes a job

For example, continuing the case earlier on of the cmsh session with the foreach listing (here):

The administrator can suspend the running job with job ID 57 on the Slurm instance as follows:

Example

[basecm11->wlm]% jobs slr; suspend 57
[basecm11->wlm[slr]->jobs]% list | head -2; list | grep 57
Type Job ID User Queue Running time Status Nodes
----- ------- ----- ------ ------------ ---------- ----------------
Slurm 57 maud defq 2m 51s SUSPENDED node002,node003

The administrator can then resume the suspended job ID 57 as follows:

Example

[basecm11->wlm[slr]->jobs]% resume 57

7.7.2.2 Commands To Inspect Jobs:

Within the jobs submode, the following commands can be used to inspect a job:

  • show <job ID>: properties are shown for a running or pending job.

    The properties that are displayed are taken directly from commands associated with particular workload managers:

    • For Slurm: scontrol show jobs

    • For LSF: bjobs

  • info <job ID>: details are shown about a particular job ID. The job can be pending, running, or completed jobs. The data is taken from the BCM database.

  • statistics: statistics are shown for jobs. More detail on the statistics command is given here.

  • list: lists pending and running job IDs along with some other associated properties. Recently completed jobs are also displayed. Completed jobs do not remain listed for longer than a few minutes. The filter command (section 7.7.2.4) can be used instead to display all jobs for that WLM instance, using data taken from the BCM database.

  • dumpmonitoringdata [OPTIONS] [ <start-time> <end-time>] <metric> <job id>: Displays the monitoring data for a specific metric or healthcheck for a running or completed job. Example: dumpmonitoringdata CtxtSwitches 170

    More detail is given on the dumpmonitoringdata command in section 10.6.4.

  • latestmonitoringdata [OPTIONS] <job ID>: Displays the last measured job monitoring data for the job.

    • latesthealthdata <job ID>: The subset of health checks within the last measured monitoring data.

    • latestmetricdata <job ID>: The subset of metrics within the last measured monitoring data.

    More detail is given on the latest*data commands in section 10.6.3.

  • measurables <job ID>: The measurables used for job monitoring data.

    • healthchecks <job ID>: The subset of health checks within the measurables used for job monitoring data.

    • metrics <job ID>: The subset of metrics within the measurables used for job monitoring data.

    • enummetrics <job ID>: The subset of enummetrics within the measurables used for job monitoring data.

7.7.2.3 The info Command Within jobs Submode

Within the jobs submode of wlm, the info <job ID> command shows job information details stored in the BCM database. BCM starts updating the job information in its database as soon as it detects a new job. When the job is completed BCM pulls a final job state and exit code from the workload manager.

Example

[basecm11->wlm[slr]->jobs]% info 3
Parameter Value
-------------------------------- ------------------------------------------------------
Job ID 3
Revision
Job name matrix-math---model-other-model-args:3-tasks:1.sbatch
Job array ID
Job task ID
User joe
Group joe
Account math
Accounting info < not set >
Workload manager cluster slurm
Queue defq
Nodes node002
Submit time 27/07/2026 02:35:24
Start time 27/07/2026 02:35:24
End time 27/07/2026 02:36:25
Run time 1m 1s
Persistent no
Exit code 0
Status COMPLETED
Requested CPUs 1
Requested CPU cores 0
Requested GPU 0
Requested memory 3.2GiB
Requested slots 0
Monitoring yes
Comment __model:other-model
Run directory /home/joe/war
Stdin file /dev/null
Stdout file /home/joe/war/matrix-3.out
Stderr file /home/joe/war/matrix-3.err
Total power usage < not set >
Total GPU power usage < not set >
Total CPU power usage < not set >
Total power under allocation < not set >
QOS normal
[basecm11->wlm[slurm]->jobs]%

The power usage fields for WLM jobs in the preceding output: Total power usage, Total GPU power usage, Total CPU power usage, and Total power under allocation, are populated based on metrics configured in the wlmjobpowerusagesettings submode in partition mode (described later on in this section).

For the associated metrics, power usage is calculated per job, for completed jobs by computing the energy consumption (the sum of power consumed over time) from the job start time until the job end time.

If no metrics are configured, then the power usage fields remain < not set >.

When the metrics are configured, the info output for a completed job shows its energy consumption:

Example

Total power usage 0 Wh
Total GPU power usage 556.649 Wh
Total CPU power usage 61.2204 Wh
Total power under allocation 0.0%

The change from < not set > to values only show up some time after the job has completed, to allow values to be properly gathered.

The wlmjobpowerusagesettings submode under partition mode: has power usage parameters that can be associated with metrics:

Example

[basecm11->partition[base]->wlmjobpowerusagesettings]% show
Job age 5m
Timeout 30s
Disabled no
Node power metrics
GPU power metrics
CPU power metrics
Power under allocation metrics
  • Job age: Minimum age of a job before power usage is calculated.

  • Timeout: Timeout for power data collection.

  • Disabled: Disables job power usage calculation when set to yes.

  • Node power metrics: Metrics used for total node power usage.

  • GPU power metrics: Metrics used for GPU power usage.

  • CPU power metrics: Metrics used for CPU power usage.

  • Power under allocation metrics: Metrics used for power consumption under allocation.

Metrics can be configured to be part of the power metrics by adding or appending them:

Example

[basecm11->partition*[base*]->wlmjobpowerusagesettings*]% set nodepowermetrics<tab><tab>
Display all 350 possibilities? (y or n)
alertlevel:count managedservicesok:pass sys_class_net_addr_assign_type:eth1
alertlevel:maximum managedservicesok:total sys_class_net_carrier:ens3
alertlevel:sum managedservicesok:unknown sys_class_net_carrier:eth0
...
[basecm11->partition*[base*]->wlmjobpowerusagesettings*]% set nodepowermetrics utilization:cmd
...
[basecm11->partition*[base*]->wlmjobpowerusagesettings*]% append nodepowermetrics udpinerrors
[basecm11->partition*[base*]->wlmjobpowerusagesettings*]% show
Parameter Value
-------------------------------- ------------------------------------------------
Job age 5m
Revision
Timeout 30s
Disabled no
Node power metrics UdpInErrors,Utilization:cmd
...

7.7.2.4 The filter Command Within jobs Submode

If run at the top-level wlm mode, then the filter command lists jobs for all WLM instances.

It can also be run at the submode-level jobs mode, for a particular WLM instance, in which case it lists only the jobs for that instance (section 11.5).

The filter command without any options is a bit like an extension of the list command in that it lists currently pending and running jobs, although in a different format. However, in addition, it also lists past tasks, with their start and end times.

An example to illustrate the output format for a Slurm instance, somewhat simplified for clarity, is:

Example

[basecm11->wlm[myslurminstance]]% filter
Job ID Job name User Queue Submit time Start time End time Nodes Exit code
------ -------------- ----- ----- ----------- ---------- -------- ---------------- ---------
2 hello fred defq 15:00:51 15:00:51 15:00:52 node001 0
3 mpirun fred defq 15:03:17 15:03:17 15:03:18 node001 0
...
25 slurmhello.sh fred defq 16:17:30 16:17:31 16:17:33 node001..node004 0
26 slurmhello.sh fred defq 16:18:39 16:18:40 16:19:02 node001..node004 0
27 slurmhello.sh fred defq 16:18:41 16:19:03 16:19:25 node001..node004 0
28 slurmhello.sh fred defq 16:18:41 N/A N/A node001..node004 0
29 slurmhello.sh fred defq 16:18:42 N/A N/A node001..node004 0

In the preceding example, the start and end times for jobs 28 and 29 are not yet available because the jobs are still pending.

Because all jobs for that WLM instance—historic and present—are displayed by the filter command, it means that finding a particular job in the output displayed can be hard. The displayed output can therefore be filtered further.

The following options to the filter command are therefore available in order to find particular groupings of jobs:

  • -w|--wlm: by WLM instance

  • -u|--user: by user

  • -g|--group: by group

  • --ended: by jobs that ended successfully, with a zero exit status

  • --running: by jobs that are running

  • --pending: by jobs that are pending

  • --failed: by jobs that finished unsuccessfully, with a non-zero exit status

It may take about a minute for CMDaemon to become aware of job data. This means that, for example, a job submitted 10s ago may not show up in the output.

Further options to filter command can be seen by running the command help filter within the wlm or jobs modes.

7.7.2.5 The statistics Command

The statistics command without any options displays an overview of states for all past and present jobs:

Example

[basecm11->wlm[uc]]% statistics
Pending Running Finished Error Nodes
---------- ---------- ---------- ---------- ----------
4 0 154 5 309

The options available include the following:

  • -w|--wlm <WLM instance>: by WLM instance

  • -u|--user: by user

  • -g|--group: by group

  • -a|--account: by account

  • -i|--accounting-info <field>[,<field>,...]: by free text accounting fields

  • --hour : by hour

  • --day: by day

  • --week: by week

  • --interval: by interval

The jobs statistics can be split across users. An example of the output format in this case, somewhat simplified for clarity, is:

Example

[basecm11->wlm[slurm]->jobs]% statistics --user
User Pending Running Finished Error Nodes
---------------------- ---------- ---------- ---------- ----------
alice 0 0 2 0 1
bob 0 0 5 0 4
charline 0 1 2 0 2
dennis 0 0 6 0 4
eve 0 0 4 0 1
frank 0 0 1 0 1

The job statistics can be displayed over various time periods, if there are jobs within the associated period. An example of the output format for an interval of 60s is:

Example

[basecm11->wlm[slurm]->jobs]% statistics --interval 60
Date Pending Running Finished Error Nodes
-------------------- ---------- ---------- ---------- ---------- ----------
2020/05/13 15:00:00 0 0 1 0 1
2020/05/13 15:03:00 0 0 7 0 7
2020/05/13 15:04:00 0 0 1 1 2
2020/05/13 15:06:00 0 0 3 0 7
2020/05/13 15:07:00 0 0 1 0 0
2020/05/13 15:08:00 0 0 6 0 8
2020/05/13 16:17:00 0 0 1 0 4
2020/05/13 16:19:00 0 0 9 0 36
2020/05/13 16:20:00 0 0 6 0 24
2020/05/13 16:21:00 0 0 3 0 12

In the preceding example there are no jobs within the period associated with the time 15:01 and 15:02. For readability the statistics for those intervals are not displayed.

7.7.2.6 The grid Command

The grid command displays a color-coded visual grid of historic job information in the terminal. Its use is described in section 12.8.

Example

The following shows job allocation by user for the last hour, in 5-minute intervals, with values displayed as text:

[basecm11->wlm[slurm]]% grid --start -1h --end now --interval 5m --mode user --text

The output is a color-coded terminal grid showing which users ran jobs on each node during each time interval, along with utilization percentages.

Additional options allow filtering by node, category, rack, or job attributes:

Example

[basecm11->wlm]% grid --start -30d --end now --interval 6h --mode account --text --user alice,bob

The help text for the grid command (help grid) provides further details on all available options.

7.7.2.7 The trackedjobs Command Within jobs Submode

The trackedjobs command shows how many jobs are currently being tracked per node by CMDaemon:

Example

[basecm11->wlm[slurm]->jobs]% trackedjobs
Node Jobs
-------- --------
node001 15
node002 15
node003 15
node004 16

This is useful for verifying that CMDaemon is aware of job activity on each node.

7.7.2.8 The pidsgpus Command Within jobs Submode

The pidsgpus command shows the process IDs (PIDs) and GPU indices detected on each node that is running a particular job. This is useful for inspecting which processes a job has spawned and which GPUs they are using.

Example

[basecm11->wlm[slurm]->jobs]% pidsgpus 10
node001 0, 1, 2, 3 7205 7222 7225 7226 7227 7228 7229 7230 7231 7232 7233

Each line shows the node name, the GPU indices assigned to the job, and the PIDs of the job’s processes on that node. For multi-node jobs, one line per node is displayed.

If the job has completed and is no longer tracked, the output indicates this:

Example

[basecm11->wlm[slurm]->jobs]% pidsgpus 3
node003 Job not tracked
node004 Job not tracked

7.7.2.9 The stdout, stderr, And stdin Commands Within jobs Submode

The stdout, stderr, and stdin commands display the standard output, standard error, and standard input of a job respectively:

Example

[basecm11->wlm[slurm]->jobs]% stdout 10
[Sat Feb 28 13:16:41 2026] start, process 0 of 2 on node001
[Sat Feb 28 13:16:41 2026] sleep, process 0 of 2 for 1 (9)
[Sat Feb 28 13:16:41 2026] start, process 1 of 2 on node001
[Sat Feb 28 13:16:41 2026] sleep, process 1 of 2 for 1 (9)
...

These commands retrieve the output files from the node where the job ran. The file paths for stdout, stderr, and stdin are shown in the info output for the job (the Stdout file, Stderr file, and Stdin file fields).

7.7.2.10 The persistent And forget Commands Within jobs Submode

The persistent command marks a job so that it is not automatically removed from the job information cache. This is useful for keeping a record of important jobs beyond the normal retention period configured by JobInformationKeepDuration (here) and JobInformationKeepCount (here):

Example

[basecm11->wlm[slurm]->jobs]% persistent 10

The persistent status of a job is shown in the info output as the Persistent field.

The forget command is the opposite: it removes a job from the cache immediately, regardless of whether it is marked as persistent:

Example

[basecm11->wlm[slurm]->jobs]% forget 1

7.7.2.11 Job Directives

Job directives configure some of the ways in which CMDaemon manages job information processing.

The administrator can configure the following directives:

  • JobInformationKeepCount: The maximal number of jobs that are kept in the cache, default 8192, maximal value 65536 (here).

  • JobInformationKeepDuration: How long to keep jobs in the CMDaemon database, default 28 days (here).

  • JobInformationMinimalJobDuration: Minimal duration for jobs to place them in the cache, default 0s (here).

  • JobInformationFlushInterval: Over what time period to flush the cache to storage (here).

  • JobInformationDisabled: Disables job information processing (here).

7.7.3 Job Queue Display And Handling In cmsh: jobqueue Mode

The jobqueue submode under the top level wlm mode can be used to manage queues for a WLM instance. Queue properties can be viewed and set.

From the top level wlm mode, a list of queues can be seen for each WLM instance by descending into the WLM instance with a foreach:

Example

[basecm11->wlm]% foreach * (get name; jobqueue; list)
slr
Name (key) Nodes
------------ ------------------------
defq node002,node003
uc
Name (key) Nodes
------------ ------------------------
batch node005,node006
[basecm11->wlm]%

The usual object manipulation commands (show, get, set and others) of section 2.5.3 work in the jobqueue submode.

7.7.3.1 Job Queue Parameters For Slurm

For example, for a Slurm instance, the show command might display the following properties:

[basecm11->wlm[slr]->jobqueue]% show defq
Parameter Value
-------------------------------- ------------------------------------------------
All nodes node001..node003
Name defq
Revision
Type Slurm
WlmCluster slr
Ordering 0
Default yes
Hidden no
Min nodes 1
Max nodes UNLIMITED
Default time UNLIMITED
Max time UNLIMITED
Priority Job Factor 1
Priority Tier 1
OverSubscribe NO
Alternate
Grace time 0
Preemption mode OFF
Require reservation NO
Select Type Parameters
LLN no
TRES Billing Weights
Alloc nodes
CPU bindings None
QOS
Default memory per CPU UNLIMITED
Max memory per CPU UNLIMITED
Default memory per Node UNLIMITED
Max memory per Node UNLIMITED
Max CPUs per node UNLIMITED
Default memory per GPU UNLIMITED
Default CPU per GPU UNLIMITED
Disable root no
Root only no
Allow groups ALL
Allow accounts ALL
Allow QOS ALL
Deny Accounts
Deny QOS
ExclusiveUser no
Queue State None
Nodesets ns1
Overlays
Categories
Nodegroups
Compute nodes
Options

7.7.4 Nodes Drainage Status And Handling In cmsh

Sometimes a node needs to be drained. Draining a node means not allowing new jobs to run on a node, and letting running jobs finish (drain away).

Draining nodes can be for the purpose of:

  • planned maintenance

  • hardware troubleshooting

  • preventing new jobs during system changes

  • isolating problematic nodes

Running the device mode command drainstatus displays if a specified node is in a Drained state or not. In a Drained state jobs are not allowed to start running on that node.

Running the device mode command drain puts a specified node in a Drained state:

Example

[root@basecm11 ~]# cmsh
[basecm11]% device
[basecm11->device]% drainstatus
Node Queue Status
------------------------ ------------------------ ----------------
node001 Slurm/slr/defq
node002 Slurm/uc/batch
[basecm11->device]% drain node001
Node Queue Status
------------------------ ------------------------ ----------------
node001 Slurm/slr/defq Drained

The undrain command unsets the Drained state so that jobs may start running on the node again.

The drain, undrain, and drainstatus commands have the same grouping options. The grouping options can make the command apply to not just one node, but to a list of nodes, a group of nodes, a category of nodes, a rack, a chassis, an overlay, a role, or a status. Continuing the example:

[basecm11->device]% drain -c default; !# for a category of nodes
Node Queue Status
------------------------ ------------------------ ----------------
node001 Slurm/slr/defq Drained
node002 Slurm/uc/batch Drained

The help text for each command indicates the syntax:

Example

[root@basecm11 ~]# cmsh -c "device help drain"
Name: drain - Drain jobs (not data) on a set of nodes
Usage: drain [OPTIONS/node]
Options: -n, --nodes <node>
List of nodes, e.g.
node001..node015,node020..node028,node030 or
^/some/file/containing/hostnames
-g, --group <group>
Include all nodes that belong to the node group, e.g.
testnodes or test01,test03
-c, --category <category>
Include all nodes that belong to the category, e.g. default
or default,gpu
-r, --rack <rack>
Include all nodes that are located in the given rack, e.g
rack01 or rack01..rack04
-h, --chassis <chassis>
Include all nodes that are located in the given chassis, e.g
chassis01 or chassis03..chassis05
-e, --overlay <overlay>
Include all nodes that are part of the given overlay, e.g
overlay1 or overlayA,overlayC
-m, --image <image>
Include all nodes that have the given image, e.g default-image
or default-image,gpu-image
-t, --type <type>
Type of devices, e.g node or virtualnode,cloudnode
-i, --intersection
Calculate the intersection of the above selections
-u, --union
Calculate the union of the above selections
-l, --role <role>
Filter all nodes that have the given
role
-s, --status <status>
Only run command on nodes with specified status, e.g. UP,
"CLOSED|DOWN", "INST.*"
--setactions <actions>
set drain actions, actions already set will be removed
(comma-separated)
--appendactions <actions>
append drain actions to already existing drain actions
(comma-separated)
--removeactions <actions>
remove drain actions
--listactions
list all drain actions
--clearactions
remove all drain actions
Examples: drain Drain the current node
drain node001 Drain node001
drain -r rack01 Drain all nodes in rack01
drain --setactions reboot Drain the current node, and reboot when all jobs are completed

A useful one-liner to reboot and reprovision a sequence of nodes could be in the following format:

Example

cmsh -c 'device; drain -n <nodes> --setactions powerreset ; drain -n <nodes> --appendactions undrain'

This drains the nodes and does a power reset action, which provisions the nodes. After the nodes are up again, they are undrained so that they are ready to accept jobs again. The command allows the sequence of nodes to be rebooted, for example for the purpose of upgrading a kernel, without needing to schedule a downtime for the cluster.

The cluster administrator should be aware that using the preceding one-liner is not a universal solution. For example, it is not a good solution if the drain takes a long time, because it means that nodes that drain early could be idle for a long time.

7.8 Examples Of Workload Management Assignment

7.8.1 Setting Up A New Category And A New Queue For It

Suppose a new node with processor optimized to handle Shor’s algorithm is added to a cluster that originally has no such nodes. This merits a new category, shornodes, so that administrators can configure more such new nodes efficiently. It also merits a new queue, shorq, so that users are aware that they can submit suitably-optimized jobs to this category.

Ways to configure the cluster manager for this are described next.

7.8.1.1 A New Category And A New Queue With Base View For An Existing Workload Manager Cluster

Queues can be added to a WLM cluster by running the WLM wizard (navigation path HPC > Wlm Wizard) if the WLM cluster does not yet exist. The wizard provides an option during WLM cluster creation for adding queues.

To create a new queue in an existing WLM cluster, the navigation path:

HPC > Workload Management Clusters > Job Queues > + Add

opens up a pop-up menu that allows queues to be added to the WLM cluster. The properties of the new queue can then be set in the dialog window of the queue (figure 7.33)

At least the queue name, shorq, must be set for the queue. The configuration for the queue properties is saved, and then the job queue scheduler configuration is saved.

Next, a new category can be added using
Grouping > Categories > + Add
Parameters settings in the new category can be set—at least the category name should be set—to suit the new machines The name shornodes can therefore be set here and it becomes part of the list of categories (figure 7.35). .

A new shornodes category created using Base View

Figure 7.35: A new shornodes category created using Base View

Another option within the category is to set a workload manager queue. The queue, shorq, is therefore set here for this new category.

Setting a queue for the category means configuring the options of the queue scheduler role, for example the Slurm client role, for the category. So a Slurm client role must be assigned to the category. Continuing from within the shornodes category in figure 7.35, the relative navigation path to set a queue is:
> Settings > Roles > + Add > SlurmClientRole > Queues > shorq
The appropriate queue can be selected from the queue scheduler menu option (figure 7.36):

Setting a queue for a new category using Base View

Figure 7.36: Setting a queue for a new category using Base View

In this case, the shorq created earlier on is presented for selection. After selection, the category configuration is committed.

Nodes that are to use the queue should be members of the shornodes category. The final step is then to allocate such nodes to the category. This can be done, for example for a node001, by using the navigation path:

Devices > All devices > node001 > Settings > Category

and setting the category to shornodes.

7.8.1.2 A New Category And A New Queue With cmsh

The preceding example can also be configured in cmsh as follows:

The new queue can be added from within jobqueue mode, for the workload manager. For example, if Slurm is the WLM cluster that is enabled:

[basecm11]% wlm; use slurm; jobqueue; add shorq
[basecm11->wlm[slurm]->jobqueue*[shorq*]]% commit

The new category, shornodes, can be created by cloning an old category, such as default:

[basecm11->wlm[slurm]->jobqueue[shorq]]% category
[basecm11->category]% clone default shornodes
[basecm11->category*[shornodes*]]% commit

Then, going into the roles submode, appropriate workload manager roles can be assigned, and appropriate queues can be appended and committed for that category:

[basecm11->category[shornodes]]% roles
[basecm11->category[shornodes]->roles]% assign slurmclient; commit
[basecm11->category[shornodes]->roles[slurmclient]]% append queues shorq
[basecm11->category[shornodes*]->roles*]% commit

The nodes belonging to the shornodes category can then be placed by going into device mode to select the nodes to be placed in that category. For example:

[basecm11->category[shornodes]->roles]% device use node002
[basecm11->device[node002]]% set category shornodes
[basecm11->device*[node002*]]% commit

7.8.2 Setting Up A Prejob Or Postjob Check

7.8.2.1 How It Works

Measurables such as health checks (section 10.2.4) by default run as scheduled tasks at timed intervals (here). They can independently be configured to run as prejob or postjob checks.

If a health check is configured as a prejob or postjob check, then its response means the same as that of a health check, that is:

  • If the response to a prejob or postjob health check is PASS, then it shows that the node is displaying healthy behavior for that particular health check.

  • If the response to a prejob or postjob health check is FAIL, then it implies that the node is unhealthy at the time of the check, at least for that particular health check.

Sometimes the strain of running a job can itself cause a health issue on the node. If that is the case, then sometimes the issue can be spotted by an immediate check of the node health after a job has completed—which is what the postjob health check does. A postjob health check is otherwise the same as a regular health check.

  • If a postjob health check response is FAIL, then the node is unhealthy, even though the job completed. What effect the unhealthy node had on the job may need consideration by the cluster administrator.

  • If a prejob health check response is FAIL, then the node is also unhealthy, but the job is prevented by the WLM from running on that node.

A node that has failed a prejob health check is not allowed to run a job. This is because an unhealthy node means that a job submitted to the node may fail, may not be able to start, or may even vanish outright. The way in which a job can vanish in some cases, without any information beyond the job submission “event horizon” leads to this behavior sometimes being called the Black Hole Node Syndrome.

Draining on a prejob or postjob health check failure: It can be troublesome for a system administrator to pinpoint the reason for such job failures, since a node may only fail under certain conditions that are hard to reproduce later on. It is therefore a good policy to disallow passing a job to a node which has just been flagged as unhealthy by a health check. Thus, a sensible action (section 10.2.6) taken by a prejob or postbjob health check on receiving a FAIL response would be to put the node in a Drained state (section 7.7.4). The drain state means that BCM arranges a rescheduling of the job so that the job runs only on nodes that are believed to be healthy.

A node that has been put in a Drained state with a health check is not automatically undrained. The administrator must clear such a state manually.

The failedprejob health check (here) is enabled by default, and logs any prejob health check passes and failures. By default there are no prejob health checks configured, so by default this health check should always pass.

7.8.2.2 Configuration Using cmsh

Prejob and postjob health checks can be enabled for a WLM instance:

[basecm11->wlm[slurm]]% show | grep -i job
Enable pre job no
Enable post job no
[basecm11->wlm[slurm]]% set enableprejob yes; commit

Each health check can then be enabled individually within the monitoring setup mode.

Example

For example, for the ib health check:

[basecm11->monitoring->setup]% get ib prejob
no
[basecm11->monitoring->setup]% set ib prejob <TAB><TAB>
yes no
[basecm11->monitoring->setup]% set ib prejob yes
[basecm11->monitoring->setup*]% commit
================================= ib ==========================================
Field Message
------------------------ ------------------------------------------------------
when warning: Prejob is selected, but no WLM has prejob

To allow the healthcheck to run for the prejob with the workload manager, prejob must also be enabled appropriately for the associated workload manager:

Example

[basecm11->wlm[slurm]]% get enableprejob
no
[basecm11->wlm[slurm]]% set enableprejob yes
[basecm11->wlm*[slurm*]]% commit

7.8.2.3 Configuration Using Base View

A similar configuration for prejob and postjob checks can be carried out with Base View.

For example, to configure the monitoring of nodes with a prejob check in Base View, the the Pre job value can be set for a data producer with the navigation path:

Monitoring > Data Producers > Monitoring data producers > Edit > Pre job

Prejob should also be enabled appropriately for the associated workload manager with the navigation path:

HPC > Workload Management Clusters > Settings > Enable prejob

7.8.2.4 Configuration Of Prejob Health Checks With cm-wlm-setup

To set a prejob health check up via cm-wlm-setup, cm-wlm-setup is run in step-by-step mode. During one of the steps the administrator is prompted to select, with a tick on a checkbox, which of the available health checks are to run as prejob health checks in BCM (figure 7.37):

Prejob healthcheck selection in the cm-wlm-setup screen

Figure 7.37: Prejob healthcheck selection in the cm-wlm-setup screen

If a selected health check was already set as a prejob—-that is, if the prejob parameter within the monitoring setup mode for that particular health check is already set to yes—then the checkbox is already ticked.

7.8.2.5 Custom Prejob Configuration

For more unusual prejob or postjob checking requirements, further details on how prologs and epilogs are configured are given in section 7.3.4.

7.9 Power Saving With cm-scale

The cm-scale service can be used by an administrator to reduce the energy and storage costs of compute nodes by changing their power state, or their existence state, according to workload demands. That is, cm-scale automatically scales a cluster up or down, on-demand, by powering up physical nodes, cloud nodes, or virtual nodes. The scaling is carried out according to settings in the ScaleServer role which set the nodes that are to use the cm-scale service.

The cm-scale service is covered extensively in Chapter 8.

7.10 Cgroups

Linux system processes and all their future children can be gathered into sets called process aggregations. These sets can be made into hierarchical groups with specialized behavior using the Control Groups (cgroups) mechanism. The behavior is controlled by different subsystems that are attached to the cgroup. A subsystem may, for example, allow particular CPU cores to be allocated, or it may restrict memory, or it may reduce swap usage by processes that belong to the group, and so on.

Details about Linux cgroups and their subsystems can be found at https://www.kernel.org/doc/Documentation/cgroup-v1/cgroups.txt.

As far as workload management is concerned, it makes sense to distinguish between workload manager cgroup settings and system-wide cgroup parameters. The workload manager cgroup settings allow the administrator to configure a workload manager to use cgroups in a particular way, whereas the system-wide cgroup settings allow the administrator to manage cgroups whether a workload manager is used or not.

7.10.1 Cgroups Settings For Workload Managers

If the workload manager allows cgroups usage, then BCM provides capabilities to manage the cgroup parameters within the workload manager.

7.10.1.1 Slurm Cgroups

Slurm supports 3 cgroups-related plugins. These are all enabled by default, and are:

  1. proctrack/cgroup: enables process tracking and suspend/resume capability using cgroups. This plugin is more reliable for tracking and control than the former proctrack/linux.

  2. task/cgroup: provides the ability to

    • confine jobs and steps to their allocated cpuset

    • bind tasks to sockets, cores and threads

    • confine jobs and steps to specific memory resources and gres devices

  3. jobacct_gather/cgroup: collects accounting statistics for jobs, steps and tasks using the cpuacct, memory, and blkio cgroups subsystems.

Slurm uses configuration files to store the parameters and devices used for cgroup support.

The file /cm/shared/apps/slurm/etc/ <cluster name>/cgroup.conf defines parameters used by Slurm’s Linux cgroup-related plugins. The file contains a section that is autogenerated by CMDaemon, with cgroups-related parameters defined in the SlurmServer role.

For Slurm, the administrator can set cgroups parameters using cmsh by going into the cgroups submode of the WLM instance.

Parameters that can be managed include:

ParameterDescriptionConfiguration Parameter
In cgroup.conf
Auto Mount*Force Slurm to mount cgroup subsystems if they are not mounted yetCgroupAutomount
Mount PointWhere cgroup root is mountedCgroupMountpoint
Task Affinity*Set a default task affinity to bind each step task to a subset of the allocated cores using sched_setaffinityTaskAffinity
Release Agent DirDirectory containing Slurm cgroup release_agent filesCgroupReleaseAgentDir
Constrain Cores*Constrain allowed cores to the subset of allocated resourcesConstrainCores
Constrain RAM Space*Constrain the job’s RAM usageConstrainRAMSpace
Constrain Swap Space*Constrain the job’s swap space usageConstrainSwapSpace
Constrain Devices*Constrain the job’s allowed devices (also constrain GPUs) based on GRES allocated resourcesConstrainDevices
Allowed RAM SpacePercentage memory (default is 100%) out of the allocated RAM allowed for the job cgroup RAM. If this percentage is exceeded, then the job steps will be killed and a warning message will be written to standard error.AllowedRAMSpace
Allowed Swap SpacePercent allocated memory allowed for the job cgroup swap spaceAllowedSwapSpace
Max RAM PercentMaximum percent of total RAM for a jobMaxRAMPercent
Max Swap PercentMaximum percent of total RAM for the amount of RAM+Swap that may be used for a jobMaxSwapPercent
Min RAM SpaceMinimum MB for the memory limits defined by Allowed RAM Space and Allowed Swap SpaceMinRAMSpace

* Boolean (takes yes or no as a value)

The options are always written in the cgroup.conf file. More details on these options can be found in the man page man cgroup.conf.5.

7.10.1.2 LSF

LSF allows resource enforcement to be controlled with the Linux cgroup memory and cpuset subsystems. By default, when LSF is set up with cm-wlm-setup, then both subsystems are enabled for LSF jobs. If job processes on a host use more memory than the defined limit, then the job is immediately killed by the Linux cgroup memory subsystem. The cgroups-related configuration options are available in cmsh or Base View, and can be found in the cgroups submode of the LSF cluster settings:

ParameterDescriptionConfiguration Parameter
In lsf.conf
Resource EnforceControls resource enforcement through the Linux cgroups memory and cpuset subsystem, on Linux systems with cgroups support. The resource can be either memory or cpu, or both cpu and memory, in either order (default: memory cpu)LSB_RESOURCE_ENFORCE
Process Tracking*This parameter, when enabled, has LSF track processes based on job control functions such as termination, suspension, resume, and other signals, on Linux systems which support the cgroups freezer subsystemLSF_PROCESS_TRACKING
Linux Cgroup Accounting*When enabled, processes are tracked based on CPU and memory accounting for Linux systems that support cgroup’s memory and cpuacct subsystemsLSF_LINUX_CGROUP_ACCT

* Boolean (takes yes or no as a value)

7.11 Custom Node Parameters

NVIDIA Base Command Manager 11 allows the administrator to specify the most important node parameters when a node is configured in a workload manager. But sometimes the workload manager allows the configuration of other advanced or user-defined settings for the nodes. When an administrator clones a node in BCM, or creates it from scratch, then those advanced settings may need to be configured manually per node in the workload manager. Sometimes the nodes are created or cloned automatically, for example cm-scale (Chapter 8), in which case node parameters customization is not possible without manual intervention in the workload manager configuration.

Since NVIDIA Base Command Manager version 8.2, the administrator can configure the advanced node settings in the node customizations mode of cmsh or Base View. The customizations are available in the workload manager client roles, so they can be applied at the node, node category or configuration overlay levels.

In order to configure a custom node parameter for the workload manager, the administrator adds the node customization entry and sets its value to True or False. The entry is enabled by default, that is, an associated parameter Enabled is yes by default. The workload manager can take a minute to implement the new value.

For example, Slurm’s BcastExclude parameter specifies a list of paths to exclude when broadcasting files to nodes with sbcast. It is a NodeName parameter in slurm.conf but is not directly exposed in BCM’s slurmclient role, making it a typical candidate for node customizations. To add it as a customization entry, excluding /dev/shm from broadcast operations, the following cmsh commands can be used:

Example

[basecm11]% configurationoverlay
[basecm11->configurationoverlay]% use slurm-client
[basecm11->configurationoverlay[slurm-client]]% roles
[basecm11->configurationoverlay[slurm-client]->roles]% use slurmclient
...->roles[slurmclient]]% nodecustomizations
...->roles[slurmclient]->nodecustomizations]% list
Key (key) Value Enabled
------------ ------------ -------
...->roles[slurmclient]->nodecustomizations]% add BcastExclude
...->roles*[slurmclient*]->nodecustomizations*[BcastExclude*]]% set value /dev/shm
...->roles*[slurmclient*]->nodecustomizations*[BcastExclude*]]% show
Parameter Value
-------------------------------- ------------------------------------------------
Key BcastExclude
Value /dev/shm
Enabled yes
Notes <0 bytes>
...->roles*[slurmclient*]->nodecustomizations*[BcastExclude*]]% commit
...->roles[slurmclient]->nodecustomizations[BcastExclude]]% quit

The change would show up in slurm.conf within a minute:

[root@basecm11 ~]# grep ^NodeName /cm/shared/apps/slurm/etc/slurm/slurm.conf ; \
sleep 60 ; \
grep ^NodeName /cm/shared/apps/slurm/etc/slurm/slurm.conf
NodeName=node[001-005] RealMemory=14392 Boards=1 ... Features=location=local
NodeName=node[001-005] BcastExclude=/dev/shm RealMemory=14392 Boards=1 ... Features=location=local

Different workload managers allow different kinds of node settings to be set. When the administrator configures node customization entries, BCM configures them differently depending on the workload manager that is used.

Thus if the administrator creates a new customization entry with key name <KEY> and value <VALUE>, then this is applied to the workload managers as follows:

  • Slurm: The node customization entry is appended to the NodeName line of the particular nodes in slurm.conf in the form <KEY>=<VALUE>. If the entry is removed or disabled in the BCM configuration, then the entry <KEY>=<VALUE> pair is removed from the NodeName line.

  • LSF: The entry is set in the lsb.hosts file, in the Hosts section. If the <KEY> of the entry is defined as one of the section columns, then the parameter value is replaced by BCM to <VALUE>. When the customization entry is removed or disabled, then its value is replaced by () in the section.