First, we need to set up the viewer and server environment. To run the server, we need to start our environment by opening the System Console and start our docker container:
docker run --gpus all --rm -ti --ipc=host --net=host projectmonai/monailabel:latest bash
Skip this step if you’ve already started the container for a previous app. There’s no need to start a new container if you already started one for another app. Stop previous server by pressing Ctrl+C and go to the next step.
Otherwise, the System Console can be found on the top left on this page:
After starting the docker container, the next step is to download the pathology app and a sample dataset.
Download the pathology app:
monailabel apps --download --name pathology --output apps
Start the server using the pathology app:
monailabel start_server --app apps/pathology --studies datasets/pathology/